Gossypium hirsutum (upland cotton): 107889418
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Entry
107889418 CDS
T04793
Name
(RefSeq) chromatin-remodeling ATPase INO80
KO
K11665
chromatin-remodeling ATPase INO80 [EC:5.6.2.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107889418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ghi03036
]
107889418
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
107889418
INO80 complex (yeast)
107889418
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
DBINO
Helicase_C
ResIII
DEAD
HDA2-3
PSY3
Motif
Other DBs
NCBI-GeneID:
107889418
NCBI-ProteinID:
XP_016669314
UniProt:
A0A1U8I0W5
LinkDB
All DBs
Position
A09:70507487..70517388
Genome browser
AA seq
1536 aa
AA seq
DB search
METRRQSKDSFSYSGLFNLEPLMNFKVPQPDDDFDYYGNSSQDESRGSQGGAMSHHGNGT
MSERELSLAKRKWRGALNSEEEDDDYQGTHITEERYRSMLGEHVQKYKRRFKDTSVSPAP
SRMGIPAPKSNLGSSKNRKLLNEQRAGFYDMETTSEWMNDVSSQRFANYHEADLVPKIMY
EPAYLDIGEGITFKIPPTYDKLALSLNLPSFSDIRVEEFYLKGTLDLGSLATMMASDKRF
GSRSRAGMGEPHPQYESLQARLKALAASNSSQKFSLKVSESALNSSIPEGAAGNLQRSIL
SEGGVLQVYYVKVLEKGDTYEIIERSLPKKPKVKKDPSVIDREEMEKIGKVWVTIVRRDI
PKHHRNFTNFHRKQLIDSKRFAENCQREVKLKVSRSLKFMRGAALRTRKLARDMLLFWKR
VDKEMAEVRKREEREAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKANSQPSE
ALPAKDEESNDDEKEDDGGPGVEEDPEEAELKKEALRAAQDAVSKQKKLTSAFDTECIKL
RQAAETEVPLEDNSVAGSSNIDLHNPSTMPVTSTVQTPEMFKGSLKEYQLKGLQWLVNCY
EQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPAL
KTLPYWGGLQERMVLRKNINPKRLYRREAGFHILITSYQLLVSDEKYFRRVKWQYMVLDE
AQAIKSSSSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWF
SKGIENHAEHGGTLNEHQLNRLHAILKPFMLRRVKKDVISELTRKTEIMVHCKLSSRQQA
FYQAIKNKISLAELFDSNHGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSTYFYFGE
IPNSLLPPPFGELEDIHYAGSHNPITYKLPKLVQQEVLQNSETLCSTVARGVYQEMFYKY
FNVFSSGNVYQSIFQQESISNECCVRSGTFGFSRLMDLSPAEVAFLGTGSFMERLLFSIS
RLDNQFLDGTLDDLMEVLDDDFSSSYLEMGTVRVVTRMLLMPSRSKTNLLRRRIATGPGS
DPFEALVVSHQDRLLSNTKLLHSTYTFIPRTRAPPIGAQCSDRNFAYRITEELHNPWVKR
LLIGFARTSEYNGPRMPDGPHCLIQEIDSQLPVARPALQLTYKIFGSCPPMQSFDHAKLL
TDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRR
DMVRDFQLRNDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTK
DVTVYRLICKETVEEKILQRASQKSTVQQLVMTGGHVQGDLLAPEDVVSLLLDDAQLEQK
LREIPLQAKDRLKKKQPTKGIRLDAEGDASLEDLANAGAQGTGVDPSPDPEKAKSSNKKR
KSASERQTSAKHRISQKTSEPSLVDNELDDALQDDMQSQRPKRPKRPKKSVNENLEPAIT
TAAAASASGQVPGNEFGPGGFGTEMEHNMAQSNMST
NT seq
4611 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaggcgccagtcgaaggattcgttttcctactccggtctcttcaatcttgag
cctttgatgaacttcaaagttccacaacctgatgatgattttgattattatgggaatagt
agtcaggacgagagcagaggtagccaaggtggagcaatgtcgcaccatggtaatggaact
atgtctgagagggaattgagtttggcaaagcgaaagtggaggggggcattaaatagtgag
gaggaggacgacgattatcaaggcacccatatcacagaggagcggtatcggtcaatgctt
ggagaacacgtacaaaagtacaaaaggaggttcaaggatacctctgtgagtcctgctcct
tcacgaatgggtattccagctccaaagagcaatttgggtagttccaaaaataggaaattg
ttgaatgagcagcgagcagggttttatgatatggagaccacatctgaatggatgaatgat
gttagttctcagaggtttgcaaactatcatgaagcagatcttgtgcccaaaattatgtat
gaacctgcttatttggatattggggagggtatcacttttaagatccctccaacctatgat
aaactggcattgtcattgaacttgccaagcttctcagatatccgggtggaggagttttac
ctaaagggtactttagatttggggtccttagcaacgatgatggctagtgataaacgattt
ggatctcgaagtcgagcagggatgggagagcctcatcctcagtatgaatcgcttcaggcc
agattgaaggctttggctgcttcaaactcatctcagaagttcagtctcaaggtatctgag
agtgcattgaattcctccattcctgagggggctgctggaaatttacaacggtccattttg
tcagagggtggtgtattacaggtttactatgttaaggttttggagaaaggagacacgtac
gagataattgaacgaagcttaccaaagaaacctaaagtgaagaaagacccttccgtaatt
gacagagaggaaatggagaaaattggaaaagtttgggtcaccattgttagaagagacatt
ccaaagcatcacaggaatttcactaattttcaccgaaagcaactcattgattctaagaga
tttgctgaaaactgtcagcgagaggtgaaattgaaggtgagtagatcactcaaatttatg
aggggtgctgcacttcgcacaaggaaattggctagagatatgctgttgttttggaagcga
gttgacaaggagatggcagaagtgaggaaaagggaggaaagagaagctgcagaagcttta
aggcgtgaacaggagcttcgagaagcaaagaggcagcagcaaaggctcaattttcttata
caacaaacagaactttatagtcactttatgcagaacaaggcaaattctcagccctctgaa
gctttgcctgcaaaggatgaagaatcaaatgatgatgaaaaagaagatgatggtgggcct
ggtgtagaagaagatccagaagaggctgaattgaagaaggaggctctaagagctgctcaa
gacgcagtctctaaacaaaagaagctgactagtgcatttgataccgaatgtatcaagttg
cgtcaagctgctgaaactgaggtgcctttagaagataattctgttgccgggtccagcaat
atagatctgcataacccatccactatgcctgtaacctcaacagttcaaacaccggaaatg
tttaagggttccctcaaggaatatcagttaaagggccttcagtggcttgttaattgttat
gagcagggtttaaatggtattcttgctgatgaaatgggattggggaaaactattcaggca
atggcattcttggcccatttggctgaggagaaaaatatatgggggccttttcttgtcgtt
gctcctgcttcagtattgaataactgggctgatgagattagtcgcttctgtcctgccctt
aaaactcttccatattggggtggacttcaggagcggatggttcttagaaagaacatcaat
ccaaagcgcctttatcgaagggaggctggatttcatattctgattaccagttatcaactg
ctggtgtctgatgagaagtattttcgacgtgtgaaatggcaatacatggtattagatgaa
gcacaggcaatcaagagttcaagcagtataaggtggaaaacactgcttagtttcaactgt
cgtaaccgcttgcttctgactggtacacctatccagaacaacatggcagaactatgggcc
cttctgcattttatcatgccaaccttatttgatagccatgaacagttcaatgaatggttt
tctaagggaattgagaatcatgctgaacatggaggtactttgaatgagcatcagcttaac
agattgcatgcaattttaaagccctttatgctacggcgagtgaagaaagatgtgatttct
gagctgactaggaaaacagagattatggttcactgcaagttgagttcccggcagcaagct
ttctatcaagctattaagaataagatatctctagcagaattgtttgatagcaatcatgga
catctaaatgaaaagaaaattctgaatttgatgaatattgtcattcagctgagaaaggtg
tgtaaccatccggagttatttgaaagaaatgaaggaagcacatacttctattttggagag
atcccaaattctcttctgcctcccccctttggggagttggaggatatacactatgcaggg
agtcataatcccataacctacaagttgccgaaacttgtccaacaagaggttctacaaaat
tctgaaacattatgctcgactgttgctcgtggagtttatcaagaaatgttttacaaatac
ttcaatgtattctcttcgggaaatgtttatcaatctattttccagcaagagagcatctct
aatgagtgttgcgttagaagtgggacatttgggttctcccgtctcatggatttgtctccc
gcggaggttgctttccttggaactggttctttcatggagagactcttgttttctatttca
agattggacaaccaatttttagatggaactttagacgacctaatggaggtattggatgat
gacttcagttccagctaccttgagatggggacagtcagagttgttactaggatgttgtta
atgccatcaagatccaagaccaatttgctcagaagaagaattgcaactggtcctggcagt
gatccatttgaggctttagttgtctctcatcaggacaggctgctatccaatactaaactt
cttcattcaacatacacatttatcccacgaactagagctcctccaattggtgctcaatgc
tcggatagaaatttcgcttacagaatcactgaagaactacataatccatgggttaagaga
ttgttgattgggtttgctcggacatccgagtataatgggcctagaatgccagatggtcct
cattgcttgattcaagaaattgattctcaattaccggttgcgcgacctgccctccaactt
acatataagatatttggttcttgtccccccatgcaaagttttgaccatgcaaagttgcta
acagattctggcaaacttcagacgcttgatatattactgaaacgtctccgggcagaaaac
caccgcgttcttttgtttgcacaaatgacaaaaatgctgaatatcttggaggactacatg
aactatagaaaatataggtacctgaggcttgacgggtcttctacaattatggatcgacga
gacatggtcagagactttcagctgcggaatgacatttttgtgttcttgctgagtaccaga
gctggtggattgggtattaacttgacagctgctgacactgtaatcttttatgaaagtgat
tggaatccaaccttggatttgcaagccatggacagagctcaccgtttagggcagacaaag
gatgttaccgtctatcgactcatttgtaaggaaacagttgaggagaagattttgcagaga
gcaagtcagaaaagtacagtgcagcagcttgtcatgacaggtggccatgttcagggagat
ctcttggctcctgaagatgttgtatctttacttttggatgatgcacagctggagcagaaa
ttaagagaaattccgctgcaggctaaggatagactaaagaaaaaacagccaacaaagggc
atacggctagatgcggaaggtgatgcatctttggaagacttagcgaatgctggagctcag
ggtactggggttgatccatctccagatcccgaaaaagccaagtccagtaataaaaagaga
aaaagtgcttctgaaaggcaaacatctgctaagcataggatttctcagaagacgagtgaa
cctagccttgtggataatgagttagatgatgcccttcaagatgatatgcaatcacagaga
cccaagaggcctaagagaccaaagaagagtgtaaatgaaaacctagaaccagcaattact
actgcagctgctgcatcagcttctggccaggtacctggaaatgagtttggtcctggtggt
tttgggactgaaatggagcataacatggcgcagagtaatatgtcaacgtga
DBGET
integrated database retrieval system
