Gossypium hirsutum (upland cotton): 107889476
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Entry
107889476 CDS
T04793
Name
(RefSeq) rRNA biogenesis protein RRP5 isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ghi03009
]
107889476
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
90S particles
Other 90S particles
107889476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
OB_RRP5
Spt6_S1
Suf
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
NRDE-2
Motif
Other DBs
NCBI-GeneID:
107889476
NCBI-ProteinID:
XP_016669401
UniProt:
A0A1U8HTU9
LinkDB
All DBs
Position
A09:71890453..71909644
Genome browser
AA seq
1928 aa
AA seq
DB search
MAASSKKFQKKKSNEGKRKFNKASKKQFKTKKDGAVKSEAVALQLEDDVPDFPRGGGSSL
SKHERDEIRAEVDAEFEAEELASKKNKRKKSQKKIQAMPDDLGSLFGDGITGKLPRYANK
ITLKNISPGMKLWGVVAEVNEKDLVISLPGGLRGLVRAGDALDPVVSNKVENNEGDFLKN
IFYPGQLVSCIVLQLDDDKKETGKRKIWLSLRLSFLHKGFTLDAVQEGMVLTGYVISIED
HGYMLHFGLSSFTGFLRKDGHAESKDVEVRTGQFLQGVIKSIDKTRKVVNLSSDPDTVSK
CVTKDLKGISIDLLIPGMLINASVRSTLENGIMLSFLTYFTGTVDTCHLQNKFPNKNWKD
DYNQNKKVNARILFIDPSTRAVGLTLNPHLVHNKAPPLHVNIGDIFDQSKVVRVDRGFGL
LLEIPSKPVSTPAYVNVSDVAEEEVRKLEKKFKEGTQVRVRILGFRHLEGLATGILKASA
FEGPVFTHSDVKPGMVVKAKVTSLDSFGAIVQFPGGVKALCPTRHMSEFEIAKPGKKFKV
GAELVFRVLGCKSKRITVTYKKTLVKSKLGIISSYAEATEGLVTHGWITKIEKHGFFVRF
YNGVQGFAPRSELGLGPGDDPNSMYHVGQVVKCRVTGSSPASRHINLSLQMRPVRISEDD
MVKLGSIVSGVVEGLTPSAVVINVNSKAHLKGMISNEHLADHHERAALLKSILKPGYKFD
QLLVLDIEGNNIVLSAKFSLISSAEQLPSDISQIRPNTVVHGYVCNLIETGCFVRFLGRL
TGFSPRSKAMDDHKADLSGAFYIGQSVRCNIVDVNSETARITLSLKQSCCSSTDATFIQE
YFILEEKIARLQSLGSDGSELKWIEGFNIGSVIEAKIGEAKDIGVVVSFDKYNDVLGFIT
HSQLGGLSLETGSVVQAAVLDVDKAERLVDLSLKPEFVEKSQEGSSKSQPHKKKRKREAS
KALELHQTVNAVVEIVKEHYLVIAIPEYNHAIGYASIADYNTQKLPQKQFLNGQRVIATV
MALPSPETSGRLLLLLNSIGEVTETSSSKRAKKKSSYNVGSLVPAEVTEIMPLELRLKFG
IGFCGRVHITEVNDNNVLEKPFGNFKVGQTITARIVGKPNQKGHLWDLSIKPSMLADAVE
IGVKTALEEFDFSTGQLVTGYVYKVDSEWAWLTISRHVKARLFILDTGCEPNELQQFQEC
FKVGKPVSGHILNVNKDKKLLRIVRHPLGALSTRNVGDEDKRKGESGNNISDESVTAHIH
EGDILGGRISKILPGIGGLVVQIGPNNYGRVHFTELKDAWESDPLSGYHEGQFVKCKVLE
VSHSTKGTIHIDLSLRLSLDGMIPKNPLELASDVDSTSKRAEKVEDLYPNMAVQGYVKNV
IPKGCFIMLSRKVDAKILMSNLSNGYVNDPKKEFPIGKLVSGRVLAVEPLSKRVEVTLKN
SDTKGTSKSEINDFSRLHVGDIVSGRIRRVESYGLFITLDHTNMVGLCHFSELSDDHIEN
IQTNYAAGEKVKAKILKLDEERHRISLGMKNSYFTDDIDFQITEQEESDEDIEETGVADD
DADDEARSILLTDSTGMDIKYGSGVSDVLAQAESRASIPPLDVTLDDIEHSDMENFISQN
QENNEVTGVDEKSKRRAKKKAKEEREREIRAAEERQLEKDVPRTTDEFEKLVRSSPNSSF
VWIKYMAFMLNSADIEKARAIAERALRTINIREETEKLNIWVAYFNLENQYGNPPEEAVQ
KVFQRALQYCDPKKVHFALLGMYERTEQHKLAEELLDKMSKKFKHSCKLWLRRVQMLLMQ
QQDRVQPVVNRALLCLPRHKHVKFISQAAILEFKSGVPDRGRSMFEGVLREYPKRTDLWS
IYLDQEIRLGDEDVIRALFERAISLSLPPKKMKFLFKKYLNYEKSCGDEARIESVKQKAM
DYVESTLT
NT seq
5787 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgtcttcaaagaaatttcagaagaaaaaatccaatgaagggaaacggaagttc
aataaagcgtccaagaaacagttcaaaacgaagaaggacggtgccgttaagtctgaggct
gtagctttgcaacttgaagacgatgtccccgacttccccagaggcggggggagttccttg
agcaaacacgaacgtgatgaaattcgagcagaagtggatgcggagtttgaggcagaggag
ctggcatcaaagaagaataagaggaagaaatcgcagaagaaaatccaggctatgccggat
gacttgggttccttgtttggtgatggcattactggcaaactacctagatacgcaaataaa
ataactttaaagaatatttctcctggaatgaagctctggggagttgttgctgaagtaaat
gagaaggatcttgtaattagtcttccaggcggcttacgtggtttagttcgtgctggtgat
gctcttgatcctgttgtcagtaataaagttgagaacaatgaaggggatttcctcaaaaat
atattctaccctgggcagctggtttcttgcattgtgctgcagttggatgatgataagaag
gagactggcaaaagaaaaatatggctttccttgcgtctctcttttttgcacaaaggcttc
accttggatgctgttcaagaggggatggttctcactggatacgttataagcattgaagat
catggttacatgcttcactttggactatcgtcattcacggggtttttacgaaaagatggc
catgctgaaagcaaggacgttgaagtgaggactggacagtttttacaaggggttattaag
agcattgataaaactcgcaaagttgttaatttgagttctgacccagataccgtgtctaaa
tgtgtaaccaaggatcttaagggcatctcaattgatcttcttatccctggcatgttgatt
aatgcttcggtgcggtcaacccttgagaatggtatcatgttatcatttctgacatacttt
actggaacagttgatacgtgtcatttacaaaataaattccctaataagaactggaaggat
gactacaaccaaaataagaaggttaatgctcggatattgtttattgatccctcaactaga
gcagttggcttgaccctgaatcctcatcttgttcataacaaagctcctccattgcatgtt
aacattggagatatttttgatcagtcaaaagtggtcagggtcgatagagggttcggtctt
ctgctcgaaatcccttctaaaccagtgtcaactccagcctatgtgaatgtatctgatgtg
gctgaagaggaagtccgcaagctagaaaaaaagtttaaggaaggtactcaagttcgtgtt
cgaattcttgggttccgacacttggaagggcttgccactggtattttaaaggccagtgca
tttgaaggaccagttttcactcactcagatgtgaaacctgggatggtggtaaaagctaaa
gtcacttcacttgacagctttggtgccattgtgcaatttcctggtggtgtgaaggcacta
tgtcccacacggcacatgtctgaatttgaaattgcaaaacctggaaagaagtttaaggtt
ggagctgaattagtcttccgggtgctcggttgcaagtctaagagaataactgtcacttac
aagaaaactctcgtgaaatcgaaacttggtattattagttcttatgctgaagcaactgag
ggactagtaactcatggatggataactaaaattgaaaagcatggattctttgtccggttt
tacaatggagtccaaggatttgcacctagatccgaacttggcttaggaccaggagatgat
ccaaattcaatgtatcatgtgggacaagttgttaaatgcagagtaaccggttcttcacct
gcttcaaggcatatcaatcttagtttgcagatgaggcccgtgaggatttctgaagatgat
atggtcaagttgggtagcatagtttctggggttgttgagggtttaactccctctgcagta
gttataaatgttaactcgaaagctcacttgaagggtatgatatctaatgaacatttggca
gatcatcatgaacgtgctgccttgttgaaatcaatcctgaagcctggatataagtttgat
caactgctggttctagatattgagggcaataatattgtactctctgcaaaattctctctc
ataagttcggctgaacaactgccttctgatatcagtcagatccgacctaacacagtggtt
catggctatgtttgtaatttaattgaaactggctgctttgtccgctttcttgggcgtttg
actggtttctcacctcgaagcaaggcaatggatgaccataaggctgatctctctggagcc
ttttacattggccaatctgttcgctgtaatatagtcgatgtaaatagtgaaacagcaaga
ataacactttctttgaagcaatcatgttgttcttcaacagatgcaacgtttattcaagaa
tactttatattagaggagaagattgctaggctgcaatcactgggctctgatggatctgag
ttgaagtggattgaaggatttaatattggcagtgtcattgaggcaaaaattggagaggca
aaggatattggagtagttgtcagctttgacaaatataacgatgttttaggctttatcaca
cattctcaattaggtggactttctttagaaactggatctgttgtacaagctgcagttctt
gatgttgacaaggcagaacgccttgttgatttatccttgaaacctgaatttgttgagaaa
tcacaagagggaagctctaaaagccaaccacacaaaaagaaacgcaaaagagaagcttcc
aaggccttggagctgcaccaaacagtaaatgctgttgtggagattgtgaaagaacattac
ttggttattgcaattcctgagtataaccatgccatagggtatgcatcaatagcagattac
aatacacagaagcttccgcagaaacaatttttgaatgggcagagggttattgcaactgtt
atggctcttccgagtcctgaaacgtcaggaaggttgcttttactccttaattcaattggt
gaggtcactgagacatccagttcaaaacgggccaaaaagaagtctagttataatgtggga
tcattggttccagcagaggttactgaaataatgccccttgagttgagattgaaatttgga
attggtttctgtggacgggttcatataacagaggtaaatgataataatgttcttgaaaag
ccatttgggaacttcaaagttgggcagacaatcactgcaaggattgtcggaaagcctaat
cagaagggacacctatgggatttgtctattaaaccctccatgcttgctgatgctgttgaa
ataggtgttaagactgcactggaagagtttgatttttcaactggacaacttgtcactggt
tatgtctacaaagtggacagtgaatgggcgtggttaaccatttctcgtcatgtgaaagct
cgactatttattcttgataccggatgtgaacctaatgaacttcagcaattccaggagtgc
tttaaagttggaaagcctgtttctggtcacattttaaatgttaacaaggacaaaaagctg
ttacgaatagtgcgacatcctctaggtgccctttctactaggaatgttggtgatgaagat
aaaagaaaaggtgaatcaggtaataacatttcagatgagagtgtgacagctcatatacat
gaaggagacattctaggtggtagaatttccaaaatacttccaggtataggaggactggtt
gtgcaaattggtcctaataattatggtagggttcactttactgaactgaaggatgcatgg
gaatcagacccactatctggatatcatgaggggcaattcgttaagtgcaaagtcctagaa
gtgagccactcaaccaagggaactattcacattgatttatccttacggctatctttggat
ggcatgattcccaagaatcctttggaacttgcgagtgatgtggattctacaagcaagcgt
gcagaaaaagttgaggatctttatcccaatatggctgtacagggttatgttaaaaatgtt
attccaaaaggatgcttcattatgctttcaaggaaggtagatgcaaaaatcctcatgtca
aatttatctaatggctatgttaatgacccgaaaaaggaatttcccataggaaagcttgta
tctggaagggtattagcagttgagcctttgtcaaagcgagtagaagttaccttgaaaaat
tcagatactaagggcacttcaaaatctgaaattaatgattttagtagactgcacgttgga
gatatagtttcaggcaggatcaggcgtgtggagtcgtatggtttgtttatcacacttgac
cacacaaacatggttggactttgccatttctccgagctttcagatgatcacattgagaac
atccaaactaactatgctgcaggggagaaggttaaagcgaagatattaaagttggatgag
gaaagacaccggatttcccttggcatgaaaaattcatattttaccgatgatattgacttc
caaataactgaacaagaagagtctgatgaagacattgaagagactggtgtagcagatgat
gatgcggatgatgaggcacggtcaatactgttgacagacagcactgggatggatatcaag
tacggaagtggagtgagtgatgttcttgctcaagcagaatctagagcttcaattcctcca
cttgatgtcactcttgatgacattgaacactctgacatggaaaattttattagtcaaaat
caagaaaataatgaggttaccggcgttgatgagaagagcaagagacgggcaaaaaaaaaa
gcaaaggaagagagggagagagaaattagagctgctgaggaaagacaattggagaaggat
gtaccaagaactactgatgaattcgagaaacttgttaggagctctcctaatagtagtttt
gtgtggattaaatacatggctttcatgcttaattcagctgatatcgagaaagctcgtgct
attgctgaaagggctttgagaaccattaacattcgagaagaaacagagaagctaaatatc
tgggtggcttactttaatttggagaatcagtatgggaatcctccagaggaagctgtgcaa
aaagtatttcaaagggcattgcagtattgtgatcccaaaaaggtacattttgcacttttg
ggcatgtatgagaggacagagcaacataaattggccgaagagctacttgacaaaatgagc
aagaagtttaagcactcgtgcaagctttggttgagacgggtgcagatgctgttgatgcaa
cagcaggatcgggttcaacctgttgttaaccgtgctttactctgccttccacgccataag
cacgttaagtttatttcacaggcagctatacttgagttcaaatctggggttcctgataga
gggagatctatgtttgagggagttttacgagagtacccaaagagaacggatttgtggagc
atttatcttgatcaagaaattcgacttggagatgaagatgtgattcgtgctctgtttgag
agggcaattagtttgagcttaccacccaaaaagatgaagtttttattcaaaaagtatctc
aattacgaaaagtcctgtggtgatgaggcaagaattgaatctgtcaaacagaaggcaatg
gattacgtagaaagtactctaacttga
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integrated database retrieval system
