Gossypium hirsutum (upland cotton): 107889486
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Entry
107889486 CDS
T04793
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107889486
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107889486
Enzymes [BR:
ghi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
107889486
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107889486
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107889486
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
IG_AIR9
PDE12-like_N
Motif
Other DBs
NCBI-GeneID:
107889486
NCBI-ProteinID:
XP_016669416
UniProt:
A0A1U8HTW2
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Position
A09:71786113..71792974
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AA seq
602 aa
AA seq
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MLSVLRVHLPSDIPIVGCELTPYLLLRRPDKTVTTDDVPESAPLDGHFLRYKWYRIQSDR
KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDHAASSVNENG
NEEEEIFGRFNSTGSGVVNATLTGSASSASLTNGSTSLYPAAVTQRSGGETWFEVGRSKT
YTPSADDIGHVLKFECVVVDMEMKLPVGHPNTILTSRVIPAPSPIPRRLIPVSGTDTMGQ
LDSDGRISSSGTFTVLSYNILSDTYASSELYSYCPSWALSWPYRRQNLLREIVGYRADIV
CLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYGGNIHTIDGCATFFRRDRFSHVKKY
EVEFNKAAQSLTEVAVQTTQKKAALNRLVKDNVALIVVLEAKFSNQGADNPGKRQLLCVA
NTHVNVPPELKDVKIWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHSLLAMGKVD
PLHPELLVDPLAILRPHSKLTHQLPLVSAYSPFARGVGLGLEHQRRKMDITTNEPLLTNC
TRDFIGTLDYIFYTADSLTVEALLELLDEDSLRKDTALPSPEWSSDHIALLAEFRFQTRP
RR
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcgtgctacgggtgcacctcccttctgatataccaattgttggctgcgagctc
acgccttacttgcttttacgcagacccgacaagaccgttaccaccgatgacgtgcctgag
tcggcccctcttgatggtcatttcttgaggtacaagtggtatcgcatacaaagtgatagg
aaagttgctgtctgtagtgtccatccctctgagcaagccacattgcagtgcctaggttgt
gtgaaggctaaaatacctgttgctaaaagttaccattgctctccaaagtgcttctcagat
gcatggcagcatcaccgtgttctgcatgaccatgctgctagttctgtaaatgaaaatgga
aatgaggaagaagagatatttggccgtttcaatagcacagggtctggagttgttaatgct
accttaactggttcagcttcaagcgctagcttgacaaatggttctacatctctgtatcct
gctgcagttacacagaggagtggtggtgaaacctggtttgaagttggacgctctaaaaca
tatacaccctcagcagatgatattggccatgttctcaagtttgagtgtgttgttgttgat
atggaaatgaaactacctgttggacatcccaatactattttgacatctcgtgttattcct
gcaccttcccctattcctcggcgcttgatcccagtaagcggaactgatacgatgggacag
cttgattcggatggccgtatttcatcttctggaacttttactgttctgtcttacaacata
ttgtctgacacatatgccagtagtgagttatacagttattgtccatcatgggctctttct
tggccataccgcagacagaatttgttgcgagaaattgttggttatcgtgcagacattgtt
tgtcttcaagaggtgcaaaatgaccatttcgaggaatttttcgcccctgagctggacaaa
catgggtatcaagctttatacaagaggaagacaaatgaggtttacggtggaaatatccat
acaattgatggctgtgctacttttttccgtagagataggttttctcatgtcaaaaaatat
gaggttgaatttaataaggctgctcaatccttgactgaggttgcagttcaaactactcag
aagaaagctgctttaaatcgtttggttaaggataatgtcgccttaattgtggttctggaa
gcaaagtttagtaatcagggagctgacaatcctgggaagcgacagcttctttgtgtggca
aatacacatgtaaatgttccaccagagttgaaggatgtcaaaatctggcaggtgcatacc
ctcttgaagggattggagaaaatagctgcaagtgcagacattccaatgttggtgtgtggg
gattttaattcagttcctgggagtgctccccattcacttcttgctatgggaaaggtagat
ccactgcatccagaattattggtagatcctcttgcgattttgcgtcctcacagcaagttg
actcatcagttgccactggttagtgcctactcaccctttgcgagaggtgttggtcttggt
ttggaacatcagagaagaaaaatggacatcacaactaatgaacctttattaacaaattgc
acaagagattttatcggcaccctggattacatattctacaccgcggattctttaacagtg
gaggcattattggaactcttggatgaggatagcttgaggaaagacactgcccttccttct
ccagagtggtcctctgatcatatagcactgttagctgaattccggttccagacaaggcct
agacgttaa
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