Gossypium hirsutum (upland cotton): 107889580
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Entry
107889580 CDS
T04793
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107889580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107889580
03009 Ribosome biogenesis [BR:
ghi03009
]
107889580
04131 Membrane trafficking [BR:
ghi04131
]
107889580
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ghi04147
]
107889580
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
107889580
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
107889580
Membrane trafficking [BR:
ghi04131
]
SNARE
SNARE associated proteins
Others
107889580
Autophagy
Aggrephagy
Other aggrephagy associated proteins
107889580
Exosome [BR:
ghi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
107889580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_5
AAA_33
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
AAA_28
Mg_chelatase
ATPase_2
AAA_18
Parvo_NS1
IstB_IS21
ABC_tran
Viral_helicase1
NACHT
AAA_7
NB-ARC
AAA_24
TsaE
AAA_lid_PRS2_C
DUF815
Zeta_toxin
Vps4_C
Sigma54_activat
Sigma54_activ_2
Zot
Phage_Mu_Gp48
Motif
Other DBs
NCBI-GeneID:
107889580
NCBI-ProteinID:
XP_040932667
LinkDB
All DBs
Position
A09:74976151..74980873
Genome browser
AA seq
805 aa
AA seq
DB search
MSSQAESSDSKGTKKDFSTAILERKKAPNRLVVDEAINDDNSVVALHPDTMEKLQLFRGD
TILIKGKKRKDTICIALADDACDEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCV
VAPDTEIFCEGEPVRREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDESIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKACLRKSPVAKEVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRAEN
PEAMEEDVEDEVAEIKPAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFAE
TGARPAASDPFAASAGGADEDDLYS
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtctagccaagcagaatcatctgactcgaaggggactaagaaggattttagtactgcg
atcttggaaagaaagaaggcaccgaaccgacttgttgttgatgaggcaatcaacgatgat
aactctgtcgttgctcttcatcctgataccatggaaaagctccagctttttcgcggtgac
actatcctgatcaaggggaaaaagaggaaagataccatttgcattgctcttgctgatgac
gcatgcgatgagccaaagatcaggatgaataaggttgtgaggtcaaacttgagggttagg
ctaggtgatgttgtctctgtgcatcagtgtcctgatgtcaagtatggaaaacgtgtgcac
atcttgcccgtggatgacacaattgaaggggttactggaaatctgtttgatgcttacctg
aaaccttactttctggaagcataccgtccagtgaggaagggtgacctcttccttgtgaga
ggtggaatgagaagtgtggaattcaaggttattgagactgaccctcctgagtactgtgtg
gttgcaccagatactgagatattctgcgagggagagcctgtaaggagagaagatgagaat
agattagatgaggtaggttatgatgatgttggtggagtgagaaaacagatggctcagatt
cgggaattagtggaacttccactgaggcatccacagctctttaaatcaattggtgtgaag
ccacccaaaggaattttgctttatggacctcccggatctggaaagactttgattgcacgt
gctgttgcaaatgaaactggtgctttctttttttgcatcaatggtcctgagatcatgtca
aaattggctggagagagtgaaagcaatctcagaaaagcatttgaagaagcagagaagaat
gcaccgtctattatattcattgatgaaatcgattcaattgctcccaagcgagagaagacc
catggtgaagttgagaggagaatagtctctcagcttttgacattgatggatgggcttaaa
tcccgtgcacatgtcattgttattggggccacaaatcgtcccaatagcattgatccagct
ctccgaaggtttggaaggtttgatagggagattgatattggcgtacctgatgaagttggc
cgtcttgaggtgcttcgcatccacacaaagaacatgaagctgtctgacgatgttgattta
gaaagaattgccaaggacacacatggttatgttggtgctgatcttgcagctctttgtact
gaggcagcattacagtgcatcagggaaaagatggatgtgattgacttggaagatgagtca
atagatgcggagatactcaactctatggcagttagcaatgagcacttccagactgctctt
ggaacaagcaatccatcagcattacgtgaaactgttgttgaagtgcctaatgtaagttgg
gaagatattggaggcctggagaatgttaaaagagagcttcaagagactgttcaatatcca
gtggagcatcctgagaagtttgagaagtttggtatgtcaccctcaaagggagtattgttc
tatggccctccaggatgtggtaaaacacttctggccaaagctattgccaatgaatgtcag
gcaaacttcattagtgtcaagggtccagaattactcacaatgtggtttggagagagtgaa
gctaatgtacgtgaaatttttgacaaggctcgccagtctgctccttgtgtcctcttcttt
gatgaacttgattcaattgcaacccagagaggaagcagtgtaggtgatgcagggggtgct
gctgatagggttctgaatcaacttcttactgagatggatggcatgtctgccaagaaaaca
gtttttataattggagctaccaaccgacctgacattattgatcctgcccttttgcgacca
ggtcgtcttgatcagttgatttacattcccctccctgatgaggattctcgccatcagatc
tttaaggcttgcttgaggaaatcaccagttgcgaaagaggttgacctcagagctcttgcc
aagtatactcaaggttttagtggggctgatattactgaaatttgtcagcgcgcatgtaaa
tatgccatcagagagaacattgaaaaggatattgagagagaaaggaggagagcggagaac
cctgaagctatggaggaagatgtggaggatgaagtggcagaaatcaagcctgctcatttt
gaggaatcaatgaagtttgctcgtaggagtgtgagtgatgccgacatccgcaaataccag
gcatttgctcaaacgctgcagcagtcaaggggatttggaagtgagtttaggttcgctgaa
actggtgcaaggcctgcagcatctgacccttttgcagcttctgctggaggagccgatgaa
gatgacctctacagttaa
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integrated database retrieval system
