Gossypium hirsutum (upland cotton): 107889722
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Entry
107889722 CDS
T04793
Name
(RefSeq) cleavage stimulating factor 64 isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107889722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107889722
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
107889722
U7-dependent histone pre-mRNA processing factors
107889722
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Paralog
GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
CSTF_C
partial_CstF
RRM_7
DUF8400
Motif
Other DBs
NCBI-GeneID:
107889722
NCBI-ProteinID:
XP_016669752
UniProt:
A0A1U8HUQ9
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Position
D06:complement(30430845..30438475)
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AA seq
518 aa
AA seq
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MASSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEET
ALSARRNLQGYEINGRQLRVDFAENDKGSDRNREQQGRSGPGIAANIVGGPAIQGESVQH
QPIGLHLSITAAALMAGALGGAQAGLQPNQNVLPNQSAPASDPLTLHLAKMSRSQLNEIM
SELKKMATRNKELARELLLSKPQLLKAIFQAQIMLGMVTKEVLQMPNIQQPPGQLAEISI
QDGQHSKQPIAQTLHQKAQTGLIPKVLEGQMSAMPLNSLAHYQFSATVQSTLHPRTQLPQ
YSCNHVLPPAASQSFVPQLPSQNPLARPQIRVTKSSSLNQHLQTSLPHSGQLATANLSRN
NLMVSPNAVMQSTPLPTPLPDSGFQPGPSITPVFAEKSSAVHCPSAAINRPSKMVKLDDG
SSSSSSTGALNISNASGSRISQTFGVDSTLFNKITRSEEVQYAEKPVSQPQLAPDMESVL
LQQVLSLTPEQLSSLPPEQRQQVIQLQQALRQDQMQAS
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggcctcatctcaacatcgctgcgtttttgtggggaatataccatatgatgctactgaa
gaacagcttatagaaatctgcagggaggttggccctgttgtttccttcagactggtgatt
gatagagaaactggcaaaccaaaaggctacgggttctgtgaatacaaggatgaggagaca
gctttaagtgctcgacggaatcttcaaggttatgagatcaatggccggcaattacgagtt
gattttgctgaaaatgacaaaggctctgatcgaaatcgggaacagcagggtcgtagtgga
cctggaatagcagcaaatattgttggtggtccagcaatccagggtgaatctgtccagcac
cagcctattggtctccatttgtctattactgctgcagctctcatggctggtgctcttggt
ggtgcgcaggctggtctgcagcctaatcaaaatgttttgccaaaccagtctgcaccagcc
agtgaccccttaacactccatcttgcgaaaatgtccaggagccagctgaatgaaattatg
tccgagttgaagaaaatggctacacgaaataaggaactagcccgtgagctgttgctttca
aaaccccagttgctgaaagctatttttcaggcacaaataatgctaggaatggtcaccaaa
gaagtgttgcagatgccaaacattcaacagcctcctggtcaactagcagagatttctata
caagatggtcagcatagtaagcagccaatagcacaaactctacatcagaaagctcagact
ggcttgatccctaaagtactagaaggtcaaatgtctgctatgcctcttaattctttagct
cactaccaattttctgcaactgtgcaatcaactttacatcctcgaacgcagcttccacaa
tattcctgcaatcatgttctaccaccagctgcttcacagtcttttgttccccaacttcct
tcccaaaacccccttgccagaccacaaattcgggtgacaaaatcctcatctttgaaccag
catctgcagacatcattgccacactcgggacagcttgcaactgctaatttaagtcgcaac
aatctaatggtatcgccaaatgcggtcatgcagtcaactcctttgcctactcccttacca
gattctggatttcagcctggtccatcaataacaccagtctttgcagagaagtcaagtgcg
gttcactgtccttcagcagcaataaataggccatcaaaaatggtaaaattagatgatgga
agtagcagctcttcctcaacaggggctttgaatatatccaatgcaagtggttcccgaata
tcacaaacatttggtgttgattcaacacttttcaataaaataactagatcagaagaggtg
caatatgctgagaagccggtttctcagccacaactcgcacctgatatggagtctgtttta
ctacagcaagtgctaagcctaacaccggagcagttgagttcattgccacctgaacaacgc
caacaagtcattcaacttcaacaggcattgcgacaagatcagatgcaggcatcatag
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