KEGG   Gossypium hirsutum (upland cotton): 107890426
Entry
107890426         CDS       T04793                                 
Name
(RefSeq) cullin-3A-like isoform X1
  KO
K03869  cullin 3
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    107890426
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ghi04121]
    107890426
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107890426
Ubiquitin system [BR:ghi04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul3 complex
    Cullin
     107890426
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     107890426
SSDB
Motif
Pfam: Cullin Cullin_Nedd8 DNA_repr_REX1B WAC_Acf1_DNA_bd DUF4962
Other DBs
NCBI-GeneID: 107890426
NCBI-ProteinID: XP_040957545
LinkDB
Position
D09:complement(5740230..5744085)
AA seq 733 aa
MSAQKKKAFQIEAFKHRVVVDPKYAEKTWKILEHAIHEIYNHNASGLSFEELYRNAYNMV
LHKFGEKLYSGLVTTMTSHLKEISNSIEAAQGGLFLDELNRKWAEHNKALQMIRDILMYM
DRTFIPNTHKTPVHELGLNLWRDVIIHSHAIQSRLQAILLENVRRERSGEVIDRGLMRSI
TKMLMDLGPSVYQDDFEKHFLEVSADFYRLESQEFIESCDCGEYLKKAERRLNEEIERVS
HYLDTRSEVKITNVVETEMIESHMHRLVQMENSGLINMIVDEKYEDLGRMYCLFRRVSNG
LVLIRDVMTSYIRDTGKQLLTDPERLKDPVDFVQHLLDLKDKYDKIITSAFRNDKTFQNA
LNSSFEYFINLNSRSPEFISLFVDDKLRKGLRGVTEEDVELLLDKVMMLFRYLQEKDVFE
KYYKQHLAKRLLSGKSVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMQGFHA
SHGSDIGDGPMLSVQVLTTGSWPTQPITTCKLPAEILGICEKFRNYYLGTHTGRRLSWQT
NMGTADLKATFGKGQKHELNVSTYQMCVLMLFNDADRLSYKEIEQVTEIPTFDLKRCLQS
LACVKGKNVLRKEPMSKDIVDTDTFLFNDKYTSKFFKVKIGTVAAQRESEPENQETRQRV
EEDRKPQIEAAIVRIMKARRVLDHNNIVAEVTKQLQSRFLPNPVVIKKRIESLIEREFLE
RDKGDRKLYRYLA
NT seq 2202 nt   +upstreamnt  +downstreamnt
atgagtgctcaaaagaaaaaagcgtttcaaatagaggcgtttaagcatagggtggtggtt
gatcccaaatatgcagagaagacgtggaagattctggaacatgctattcatgaaatttat
aatcataatgctagtggacttagctttgaagaactttacaggaatgcatacaatatggta
ctgcataaatttggggagaaactgtattctgggcttgtcactactatgacttctcatcta
aaggagattagtaattcaattgaggctgctcagggaggattatttttggatgaacttaac
agaaaatgggcagagcataacaaggcattgcaaatgatccgagatatattgatgtacatg
gataggacctttatcccaaacacccacaaaaccccagttcatgagcttgggttaaattta
tggagggatgtcatcatccattcccatgcaatccagtctaggcttcaggctatacttctt
gaaaatgtaaggagagaacggagcggtgaagtcatagacaggggtttaatgagaagtatc
acaaagatgttaatggatctaggtccttccgtttatcaggatgatttcgagaagcatttt
cttgaggtttcagctgatttttatcgtctcgagtctcaagagttcatagagtcctgtgat
tgtggggagtatctaaagaaagccgagagacgcctaaatgaagaaatagagagagtctca
cattacttggacaccagaagtgaagtcaagataacaaatgtggtagaaacggagatgatt
gaaagtcatatgcacaggcttgtgcaaatggagaactcggggttgattaatatgattgtc
gatgaaaaatatgaggacttaggaaggatgtattgcttgtttcgtcgagtatccaatggg
cttgttttaatcagagatgtcatgacttcatacattcgtgatactggtaagcagttactc
actgatcccgaaaggctgaaggatcctgtcgattttgtgcaacatctgttggatttaaag
gacaaatacgacaagattatcacttcagcatttagaaatgacaagacttttcaaaatgca
ttaaattcctcgtttgaatatttcatcaatctgaattctcggtctccagagttcatctct
ttgtttgttgatgataagcttcgaaaaggtttgaggggggttactgaagaggatgtggag
ttgttactcgacaaggtgatgatgctcttccgttaccttcaagagaaagatgttttcgag
aagtactacaaacaacacttggccaaaaggcttctttcagggaagtccgtctctgatgat
gctgaaagaagtttgattgttaagctcaaaacagagtgtgggtatcaattcacctcaaag
ttggagggtatgttcacagatatgaagacatcacaagatacgatgcaaggtttccatgca
agtcatggttcggatataggggatggtcccatgctttctgtccaggttctgacaactgga
tcttggccaactcaacctattactacatgcaaacttcctgctgaaattctgggaatatgt
gagaaattccgtaattattacctaggtacccataccggacggagattgtcttggcaaact
aacatggggacggctgatttgaaggcaacctttggtaagggacagaagcatgaactgaat
gtttccacataccagatgtgtgtccttatgctcttcaacgatgctgatcgactaagctat
aaggagattgagcaggtgaccgagattcctacctttgacttgaaaaggtgcttgcagtct
cttgcctgtgttaagggaaaaaatgtgcttcggaaagaacctatgagcaaggacatagta
gacactgatacctttcttttcaatgacaagtatacaagcaagttcttcaaggtcaagata
ggcactgtggctgcgcaaagggagtcggaacctgaaaatcaagaaactaggcagagagtg
gaggaagatcgaaaaccgcaaattgaggcagcaatcgtgaggatcatgaaagctaggcgt
gtgctggatcataacaacattgttgctgaggtcacaaaacagctacagtcacggtttctg
cccaaccccgttgtaattaagaaacggatcgagtcccttattgagcgggagttcctggag
agggataaaggtgacaggaagttgtatcgctaccttgcttga

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