Gossypium hirsutum (upland cotton): 107890584
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Entry
107890584 CDS
T04793
Name
(RefSeq) probable pectate lyase 1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107890584
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107890584
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107890584
NCBI-ProteinID:
XP_016670576
UniProt:
A0A1U8HX26
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Position
D09:complement(50245066..50249832)
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AA seq
447 aa
AA seq
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MAVSNNWAFASLALLFLLLVAAMATVRTGNVSSNVETEKVQSSKNSTMAARSEEVEPLNE
HAVPDPEAVAAEVESIIDMNIRNVTERRKLGFFTCGTGNPIDDCWRCDPNWQKNRKRLAD
CGIGFGRNAIGGRDGRFYVVTDPNDDDPVNPKPGTLRHAVIQDEPLWIVFNRDMVIRLKQ
ELIMNSFKTIDGRGVNVHIANGACITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPSHFGW
RTMADGDAISIFGSSHIWVDHNSLSNCADGLVDAVMGSTAITISNNHMTHHNEVMLLGHS
DSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ
GNRYAAPTNPFAKEVTKRVDTAEGQWKSWNWRSEGDLLLNGAYFTPSGAGASASYARASS
LGAKSSSMVGAMTSNAGALPCRRGKQC
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttcaaacaactgggctttcgcttctttagctcttctgtttttgcttcttgtt
gccgcaatggctactgtacggaccggcaacgtttccagcaatgtggaaacagagaaggtg
cagagctcaaagaactccacaatggcagctaggtcagaggaggtcgagccacttaacgag
catgccgttcctgacccagaggctgtagcagccgaggtggaatccatcattgacatgaac
attcgcaatgtgactgaaagaagaaagttggggttcttcacatgcggaacaggtaacccc
attgatgattgctggcgttgtgacccaaactggcagaagaaccggaagagacttgctgat
tgtggcattggttttggaaggaatgcaattggtgggcgtgatggacgtttctatgttgtc
actgaccctaatgatgatgaccctgttaaccccaaacctggtaccttgcgtcatgctgtg
atccaggacgagcctctttggattgtgttcaatagggacatggttattcggttgaagcag
gagctgattatgaacagttttaagaccattgatggtcgtggggtgaatgtccatattgct
aatggggcatgtatcaccatccagtatgttaccaatgtgatcattcatggtcttcatatt
catgactgtaagcctactggcaatgctatggtgagaagctcaccgtctcactttgggtgg
aggacaatggctgatggcgatgcaatctccatcttcggttcaagccacatttgggttgat
cacaattctctctctaattgtgctgatggtcttgttgatgctgtcatgggctcaactgcc
attaccatctccaacaaccacatgacccaccacaatgaggtgatgttgctagggcacagt
gactcctacacaagggacaagcaaatgcaagtgaccattgcctacaaccatttcggagag
ggactaatccagagaatgccaaggtgtaggcatggatatttccatgtggtgaacaatgac
tacactcactgggaaatgtatgctattggtggaagtgcaaaccccaccatcaacagccag
ggtaacagatatgcagctccaaccaacccatttgcaaaggaggttaccaagagagtggat
acagctgaagggcagtggaagagctggaattggaggtcagaaggagacttgttactgaac
ggtgcctacttcacaccatctggagctggagcctcagccagctatgccagggcctcaagc
ttgggagccaagtcctcttccatggttggagccatgacttccaatgctggtgctcttcct
tgccgcagaggcaagcaatgctag
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