Gossypium hirsutum (upland cotton): 107890625
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Entry
107890625 CDS
T04793
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X3
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107890625
03015 mRNA surveillance pathway
107890625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107890625
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107890625
5.6.2.5 RNA 5'-3' helicase
107890625
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107890625
mRNA cycle factors
Common to processing body (P body) and stress granule
107890625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
ATPase
nSTAND3
PhoH
NPHP3_N
UvrD-helicase
SRP54
AAA_16
AAA_22
AAA_32
Ribosomal_S13_N
AAA
Motif
Other DBs
NCBI-GeneID:
107890625
NCBI-ProteinID:
XP_016670629
UniProt:
A0A1U8I4H8
LinkDB
All DBs
Position
D09:complement(49832528..49843148)
Genome browser
AA seq
1104 aa
AA seq
DB search
MGSHFETASQPDPATDAYTFLEFNTQLESDFGYTDSRDPICSWPTPYDATAADRSGSDTA
ASSSPSTASKGAARGVNSNNNSNSCSGTVVDALATGISGLNFEETAGDEDGGYEYGKGDS
VEHSCRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHVVNHLVRAKHKEVCLHKDSPL
GETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWDLSQWCPLIDDR
CFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNSDASLEDLEKPGIDDEPQPVALKY
EDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRVAYFVFPKEDNELRL
VPGDELRLRYSGDAAHPAWQAVGHVIKLTAQEEVALELRASQGVPVDVSHGFSVDFVWKS
TSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQAF
AVKSVLQKPISLIQGPPGTGKTVTSAAIVYNMAKQGQGQVLVCAPSNVAVDQLAEKISST
GLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQLLKDEQGELSSSDEKKY
KALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGVK
QVVLVGDHCQLGPVIMCKKGARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNS
FYEGTLQNGVTINERQSSGIDFPWPVPNRPVFFYVQMGQEEISASGTSYLNRTEAANVEK
IVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKD
YIILSCVRSNEHQGIGFLDDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEH
ECLIEGPLNNLKQSMVQFQKPKKVYNDRRVFFSRGPGIVPSDNFASAASSSPNADRRNSR
ARGAYMPPGLPNGTHKPGVQPTRFEMPQVPLQPFPGPPSQPYAIPTHEAVHGPVGAVPQV
PQPGNRGFGAGCGNAGAPISSLLQHQQGTPQNAGTLGSAFNFPTLENPSGQPSMGGQLSQ
PGFVNNMAIQGPSQSLHDGFSRGV
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atgggatctcatttcgagacggcctcgcaacccgacccagccacagatgcttacacattc
ctcgaattcaacacccaactcgagtccgattttggctacacggactctcgagacccgatt
tgttcttggccgacaccctacgacgccaccgccgctgatcgctccggctccgacactgct
gcctcctcctctccctctactgcttcaaaaggagctgcccgtggcgtaaatagtaataac
aacagcaatagttgtagtggaaccgtggttgatgcgttagctacggggattagtggattg
aatttcgaggagacagctggggatgaggatggtggttatgagtacggaaaaggggattcc
gtcgagcactcttgtcggtattgtggggtttcaaacccggcttgcgtggttcgctgtaac
gtcccatcgtgtaggaagtggttctgtaattcaagagggaatacatctggctcgcatgtt
gttaatcatctcgtacgagctaaacacaaggaagtctgccttcataaggatagtcctttg
ggagaaacaattcttgaatgctacaactgtggatgcagaaatgttttccttcttggtttt
atttctgctaagacagagagcgttgttgttcttctttgtagagaaccttgtttgaatgtt
aatgctttgaaggacatgaattgggacttgagtcagtggtgtccccttattgatgataga
tgctttttgcagtggttagttaaggtcccatctgaacaagagcagctaagggcacggcaa
ataagtgctcagcagataaacaaggtagaagagctttggaagacaaattctgatgcctcc
cttgaagatcttgagaagcctggcatagatgatgaacctcaacctgtggccttgaagtat
gaagatgcttatcagtatcaaaatgtttttgctccacttattaagcttgaagctgactat
gataaaatgatgaaagaatctcaaagcaaggacaatgtcaccgttcgatgggatattggc
ttaaacaagaaacgagttgcatattttgtttttccaaaggaagacaatgagctgcgtcta
gtacctggtgatgagttgcgactgcgttattcaggagatgctgcccacccagcatggcag
gctgttgggcatgtgatcaagctaacagcacaagaggaagttgcacttgagctccgtgct
agtcagggagttcctgttgatgtcagccatggattcagtgttgattttgtctggaagagt
acaagctttgaccggatgcagggggcaatgaaaacatttgcagttgatgaaacaagtgtt
agtggatatatttaccaccaccttcttggccatgaggttgaggttcaaatggttcgtaat
acactgcctcgacgttttggtgctcctggtctgccagaactgaatgcatctcaagctttt
gctgtaaagagtgttcttcagaagccaataagcctgattcaagggccccctggcactgga
aaaactgttacttctgctgcaattgtttataacatggctaaacagggtcagggacaggtt
ctagtctgtgctccaagtaatgtggctgttgaccagctagctgaaaagatcagttccact
gggttaaaggttgtaaggctttgtgctaaatcaagggaagctgtgagttctcctgttgaa
catttgaccctgcattatcaggttcgacatcttgacacatctgagaaaagtgaacttcac
aagttacaactattgaaagatgaacaaggtgaattgtcaagtagtgatgagaaaaagtac
aaagcactaaagcgagcaacagagagagaaatatcccaaagcgctgatgtcatttgttgc
acttgtgttggggctggagatcctagattggcaaattttaggttccgccaggtacttatt
gatgagtctactcaggcaactgaacctgagtgtctcattcctttagttcttggagtgaag
caggttgttcttgttggtgatcattgccaacttggtcctgttatcatgtgcaagaaagga
gctcgtgctgggctagcacaatctctatttgaacgtctagttttacttggtgttaaacca
attagattacaggtccaataccgtatgcacccatgtttatcagagtttccttctaatagc
ttctatgaaggcacattacaaaatggagtgacaatcaatgaaaggcaatcatcgggcatt
gattttccttggcctgtgcctaatcgtcccgtgtttttttatgtacagatggggcaagag
gagattagtgctagtggaacatcatatctcaatcgaactgaggctgcaaatgttgaaaag
attgttaccacattcttgaggagtggtgttgttcctagtcagattggggtcataacaccg
tatgagggacaaagggcatatattgtaaattatatgtcaagaaatggtgctttgagacag
cagctttacaaagaaattgaggttgcaagtgttgattcgttccaaggacgggaaaaagat
tacatcatcttgtcttgtgtgagaagtaatgaacatcagggtattggatttctagatgat
ccccgcaggcttaatgttgccttaacacgtgctcgatatggtattgtaattcttggaaac
cccaaagttcttagcaaacaacctctgtggaatggtttattgacacattacaaggaacat
gagtgcctcattgaaggacccctaaataacttgaagcagagtatggttcaattccaaaag
cccaaaaaggtgtacaacgatcgaagagttttctttagccgtggacctgggattgtgcct
agtgataattttgcatctgctgcctcatccagtccaaatgcggatagaagaaatagtcgt
gctcggggtgcgtatatgcctcccggtcttcctaatggtactcacaagcctggggttcaa
cctaccaggttcgaaatgccccaggttcctcttcaaccatttcctggtcctccttcccaa
ccttatgctattccaactcatgaagctgtacatggacctgtgggagctgttcctcaggtc
ccacaacctggaaaccgaggctttggagctggatgtggtaatgctggtgctccaatcagc
agtcttctccagcaccagcaaggcacaccacagaatgctggaactcttggatctgctttt
aacttccctactctggaaaatccaagcggccagccatctatgggtggtcaattatctcaa
cctggatttgtgaataatatggcaatccaagggccaagccaatcattacatgatggattt
tcaaggggggtatag
DBGET
integrated database retrieval system
