Gossypium hirsutum (upland cotton): 107891227
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Entry
107891227 CDS
T04793
Name
(RefSeq) splicing factor 3B subunit 3 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107891227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107891227
03041 Spliceosome [BR:
ghi03041
]
107891227
03036 Chromosome and associated proteins [BR:
ghi03036
]
107891227
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
107891227
Spliceosome [BR:
ghi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
107891227
Complex B
107891227
Complex C
U2 SnRNP specific factors
107891227
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
107891227
TFTC complex
107891227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
107891227
NCBI-ProteinID:
XP_016671445
UniProt:
A0A1U8HZL3
LinkDB
All DBs
Position
D09:complement(42688508..42702022)
Genome browser
AA seq
1387 aa
AA seq
DB search
MALSEEECSTAKASSSSPASSSATVSSQGVNYLAKCVLRGSAILQVAYGHLRSPSSLDVV
FGKETSIELVIIGEDGIVTSVCEQTVFGTIKDLAILPWNEKVYGQNTQMPGKDLLVVISD
SGKLSFLSFCNEMHRFFPVDHIQLSDPGNARDQIGRMLAVDSTGRFIATSAYEDRLAFFS
LSMSGDDIIDKKIFYPPENEGSGSSTRNAQRISVRGTIWSMCFVSKDPIQTNKEHNPVLA
IVLNRKGNTLNELVLLGWNLSEHAVFILSQYLEAGPLAHSIVEVPHSCGYALLFRVGDAL
LMDLRDARNPHCVYRTTLDFSVHTPEEHICVEELCTAHEFDDDGLFNVAACALLQLSDYD
PMCIDGESGSGKTTCKHVCSFSWEPKSNRSPRIIFCLDTGEFYMIDVSFDSDGPKVNISD
CLYRSQPCKSLLWVDGGFLVAIVEMGDGLVLKVENEKLIYKSPVQNIAPILDMSIVNYHG
EKHDKMFACCGVAPEGSLRIIRSGISVEKLLRTAPIYQGISGTWTVQMKFTNSYHSFLVL
SFVEETRVLSVGLSFTDVTDSVGFQPDVCTLACGLVADGQLIQIHQNAVRLCLPTKAAHS
EGIIMSSPVCITWSPDNMSISLGAVGQSLIVVSTSNPYFLFILGVRSLSAYNYEIYELQH
VGLQYELSCISIPQKHLEMRHLSSNVNLVDVGGAVPPVGVGMGITFVIGTHKPSVEILSF
APEGLRVLGAGTISLTTIMETAISGCIPQDVRLVLVDQFYVLAGLRNGMLLRFEWPSAFT
PSSELCLRSSIPFPEKVENFLLNTKLNSFGSETCSVNMGEKDGLPVTLQLIATRRIGITP
VFLVPLSDSLDADIIALSDRPWLLHTARHSLSYTSISFQPSTHATPVCSVECPKGILFVA
ENSLHLVEMVHSKRLNVQKFHLEGTPRKVLYHSESKLLIVMRTEPNSDTCSEICGVDPLS
GSVMASFKLGPGETGKCMELVRAGNEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCIE
HVQHSDSGSMTFSSMAGSSSQRNSPFREIVGHATEQLSSSSICSSPDDTSCDGVKLEETE
AWQFRPAYTTTWPGMVLAICPYLGRYFLASAGNAFYVCAFPNDNPQRVRRFAIARTRFMI
TSLTAYFTRIAVGDCRDGILFYSYNEDTKKLDQTYCDPSQRLVADCVLTDADTAIVSDRK
GSIAVLSCSDRLEDNASAERNLTQICAYYMGEIAMSIKKGSFIYKLPADDMLNSCEALNA
SLDPSHSAIMASTLLGSIMIFIPISREEHELLEAVQARLILHPLTAPVLGNDHNEYRSRE
NPAGVPKVLDGDMLSQFLELTSMQQEAVLSFPIISPVAQKLSPKPPPSPIPVSKVVQLLE
RVHYALN
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atggcgctttccgaggaagagtgctcaacggcgaaggcttcttcctcttcaccggcatcg
tcgtcagcgactgtttcttcgcaaggcgttaactacctagccaagtgtgtacttagagga
agtgctatccttcaggtcgcttacggtcatctccgttctccttcttccctggacgtcgtt
ttcggcaaggagacgtccatagagttggtaataattggtgaagatggtattgtgacatct
gtctgtgagcagactgtctttggtacaataaaggatcttgccattctaccttggaatgag
aaggtctatggacaaaatacacagatgcctgggaaagacctgttggttgttatttctgat
tccggaaagttatcttttctctcattttgcaatgagatgcacaggttttttcccgtcgac
catattcagctttcagatcctggaaatgcaagggatcaaattggaagaatgctagctgtt
gattcgactggccgtttcatcgctactagtgcttatgaagaccgattagcctttttttct
ctttcaatgtctggagatgatattattgacaagaaaatattttatccacctgagaatgaa
ggcagtggtagttctactagaaatgctcaaagaattagtgtacgtggtacaatatggagc
atgtgctttgtttcaaaagatcctatccaaacaaataaggagcataatcctgttttagcc
attgttttaaataggaaaggtaataccctgaatgaactggtattgttgggatggaatcta
tcagagcatgcagttttcatcctttcacagtatcttgaagctggaccactagcacatagc
attgttgaagttcctcattcctgtggatatgcgttgctgtttagggttggtgatgctctc
ttgatggatcttagagatgcacgtaatcctcattgtgtgtatagaacaaccttagatttt
tcagtccatacaccagaggaacatatttgtgttgaagagttatgtacagcacatgaattt
gatgatgatgggttatttaatgttgctgcatgtgctttactgcagctgagtgattatgat
ccaatgtgtatagatggtgaaagtggaagtggaaaaacaacctgcaaacatgtttgctca
tttagttgggaaccgaaaagcaatagaagtccgaggataatcttttgtcttgatactgga
gaattttacatgatcgatgtttcctttgattctgatggccctaaggtgaatatatctgat
tgcctctacagaagtcaaccttgcaagtcccttttgtgggtcgatggtgggttcctggtg
gcaattgtagagatgggggatggtctggtccttaaggttgaaaatgagaagctaatatac
aaaagtcctgttcaaaatatagctcccatcttggacatgtcaatagtgaattaccatggg
gagaaacatgataaaatgtttgcatgctgtggtgttgcacctgagggatcattaagaatc
atacgaagtggaattagtgtagaaaagcttctaagaactgcccctatttaccaaggaata
agtggaacgtggacagttcagatgaaatttacaaactcttatcattcttttcttgtgcta
tcatttgttgaggagaccagggtactctcagttggattaagctttactgatgttactgat
tcagttggtttccaacctgatgtctgtactttggcatgtggtcttgttgctgatggccag
ctcatccaaattcaccaaaatgcagttaggctttgtttgcctactaaggctgcccattct
gaaggtatcattatgtcttctcccgtctgcataacttggtccccagataatatgagtatc
agtttgggggcagttggccaaagtttgatagttgtctccacttctaatccatatttcctt
tttattcttggggtcagatcactatcagcatataattacgaaatatatgaactgcagcat
gtaggattgcagtatgagttatcgtgcatatcaatacctcaaaagcatttggagatgagg
catttaagctctaatgtaaacctggtggatgttggtggagctgttcctcctgttggagtt
ggcatgggtattacctttgttattggtacccataagccttctgtggaaattctatctttt
gcacctgaaggtctaagagttcttggtgctggaacgatttcactaacgactattatggaa
actgctattagtggttgcattcctcaagacgtaaggctagttcttgttgatcagttttat
gttctggcaggattgaggaatggaatgctgcttcggtttgagtggccttctgccttcact
ccttcatcggaactatgcctacgtagttctattccttttcctgaaaaggttgagaatttt
ttattgaatacaaaattaaattcgtttggatcagaaacatgttctgttaatatgggtgag
aaagatggccttcctgttactcttcaattgatcgcgactcgtagaattggcattacccca
gttttccttgttcccttgagtgattcacttgatgcagatattatagctctcagtgacagg
ccttggttattgcatacggctaggcatagcctttcttatacatctatatcatttcaacct
tccacgcatgcaactcctgtgtgttctgttgaatgccctaaaggaattttatttgtcgca
gaaaacagtttacatttggtggagatggtgcacagtaagagacttaatgtgcagaagttt
catcttgaaggcactccacggaaggtcctgtatcatagtgaaagtaagcttttaattgtg
atgaggactgagccaaatagtgacacatgttctgaaatttgtggtgtggaccccctcagt
gggtctgtgatggcatctttcaaactcggacctggagaaactggaaaatgcatggaactt
gttagggctggaaatgaacaggttctagtagttggaactagcctgtcttctggtccagca
ataatgcccagtggtgaagctgaaagcaccaagggccgtctaattgtcctctgcattgag
catgtacaacattcagatagtgggtcgatgacgttctcttcaatggctgggtcatcttct
caacgaaactcaccatttcgtgaaattgttggtcatgccactgaacaactatcaagcagt
agtatctgtagtagcccagatgatactagttgtgatggagtaaaactggaagaaactgaa
gcatggcagttccggccggcttacacaaccacttggcctggaatggtacttgctatatgt
ccatatctaggccgttacttcttggcctctgctggtaatgctttctatgtatgcgctttt
cccaatgataatcctcaaagggtgagaagatttgcaatagcgaggacgcggtttatgata
acatcattgacggcatattttactagaattgctgtaggcgattgtcgtgatggtattctt
ttctattcatataatgaggacaccaagaagctggatcagacatattgtgacccgtctcaa
aggttagttgctgattgtgttcttacagatgctgataccgccattgtttcagatcgtaag
ggcagcattgctgtcttgtcttgttcagatcgtcttgaagataatgcaagcgctgaacgc
aacttgacgcagatttgtgcatactatatgggtgagattgccatgagcatcaagaagggt
tcatttatttacaaacttccagctgatgatatgttaaacagctgtgaggctctgaatgca
agtcttgacccttcacatagtgctataatggccagcacactcctgggaagcataatgatc
ttcatacctatatcaagggaggaacacgaactgttggaagctgtccaagctagactcatt
cttcatccattgactgctcctgtattaggcaatgatcataacgaatatcgtagtcgtgaa
aacccggctggcgtccccaaggtacttgacggtgacatgctatctcaattcttggagctt
acaagcatgcagcaagaggctgtattgtcatttcccattatttctccagttgctcagaag
ttgagtccgaaaccaccaccttcacctatcccggtcagcaaggtcgtgcaactccttgaa
cgagtccattatgccttgaattaa
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integrated database retrieval system
