Gossypium hirsutum (upland cotton): 107891393
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Entry
107891393 CDS
T04793
Name
(RefSeq) probable E3 ubiquitin-protein ligase RHC1A
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107891393
04121 Ubiquitin system [BR:
ghi04121
]
107891393
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107891393
Membrane trafficking [BR:
ghi04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
107891393
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107891393
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
zf-rbx1
zf-RING_11
zf-C3HC4
zf-RING_UBOX
zf-ANAPC11
zf-C3HC4_3
zf-RING_5
CxC4
zf-Nse
Rad50_zn_hook
zf-C3H2C3
Motif
Other DBs
NCBI-GeneID:
107891393
NCBI-ProteinID:
XP_040956590
UniProt:
A0ABM3AP22
LinkDB
All DBs
Position
D09:40597382..40602461
Genome browser
AA seq
311 aa
AA seq
DB search
MSTGRNTHWCYRCRRPVILQGHDSVCCYCGGGFVQELDEMVPISPMDFFGVPGDEDRGQR
FGLMDAFSAFMRQRLADRSFNHNIRGRTDSILEHNPPFGPLLVFGGQIPFRLSGNGGFEA
LFNGAPGIGFTRGNAGNYFIGPGLEELFEQLSANDRRGPPPATRSSIDAMPTVKITRRHL
HSDSHCPVCKDKFELGSEARQMPCNHLYHSDCIIPWLVQHNSCPVCRQELPPQGSGSSQS
YNPRGQSRSSNFGSSSSGRESQSSRRNPFSYFWPFRSSNSSSSHNGAAGSSSPRHVHENN
QSMGYNGWPFD
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atgtcaactggaagaaatacccattggtgttatagatgcaggcgcccagttatccttcag
gggcatgattcagtttgctgctattgtggtggggggtttgttcaagaactggatgaaatg
gtgcctatcagtcccatggatttttttggagttcctggtgatgaagatcgtggtcagaga
tttggtctcatggatgctttttctgccttcatgaggcagagattggctgatagaagtttt
aaccataatatcaggggaagaacagattcaattcttgagcataatccaccatttggtcct
ttgttggtgtttggtggccaaattccttttaggttgtcagggaatggtgggtttgaagct
ctgtttaatggggctcctggaattggctttacaagaggtaatgctggaaattatttcata
ggtccaggattagaagaattgtttgaacagctgtcagctaatgatcgtaggggccctccc
ccagcaactcgatcttcaattgatgcaatgcccactgttaagattactcggaggcatctt
cattctgactcgcactgccctgtatgcaaagataaatttgaattggggtctgaagcaaga
caaatgccatgtaaccatttatatcattcggattgcattatcccatggctggtgcagcac
aactcgtgccctgtttgccgtcaagaattgccaccacaaggatcaggtagcagccagagt
tataaccccaggggtcaaagtaggagcagcaattttggaagtagttccagtggaagggag
agccaaagcagcagacgtaatccattttcatatttctggccattccgttcatcaaattca
agctctagccataatggagccgcgggaagtagttccccacggcatgtgcatgagaacaat
cagtcgatggggtataatggatggccttttgactga
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