Gossypium hirsutum (upland cotton): 107891437
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Entry
107891437 CDS
T04793
Name
(RefSeq) protein CHROMATIN REMODELING 5-like isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107891437
03036 Chromosome and associated proteins [BR:
ghi03036
]
107891437
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
107891437
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
107891437
SLIK complex
107891437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HTH_CHD1_Hrp3
Chromo
CHD1-like_C
HDA2-3
ResIII
DEAD
Chromo_MIT1
SWI2_SNF2
OAM_alpha
KH_PARP14_5
Motif
Other DBs
NCBI-GeneID:
107891437
NCBI-ProteinID:
XP_040956561
UniProt:
A0ABM3ANZ6
LinkDB
All DBs
Position
D09:39912720..39929532
Genome browser
AA seq
1752 aa
AA seq
DB search
MMAFFRNYSNDTDAHDVLEEKSQGQSIGRIRSSVGNDDVGGSGTYSEREFDINAHYQSDG
EPDGSVRLHNEVAAASGAGVSNSNFQPPGRRVAPGKWGSTFWKDCQPMDHQGGSDSGQDS
KSDHRNLEASEYNSSDDRDDRLDVEDDEAQKGKAQRGNSDVPADEMLSDEYYEQDGEEQS
DTMHYTGFSNSVGLNTRPKSKPASLSSTMSGSSRALNNFNYDDEENNHDVDYEEEEEEDE
DDPDDADFEPDYDAATGRAGNQVIDLDKDWDGEDSEEEDNSDGDVDISDEEDSYYRKKPK
GVQHVKVGLNVKPSKERKYTNRQRRGKSSFDENECSAEDSDSESVHDFKSIARRGGNHRI
SSARSNTFTSMGRNSEVRTSSRSVRKVSYVESEGSEEIEEVKKKKTLKDEAEEEDGDSIE
KVLWHQPKGMADDAIRNNRSTEPVLLSHLFDSEPDWNEMEFLIKWKGQSHLHCQWKPFFE
LQNLSGFKKVLNYTKKVMDDAKYRKALSREEIEVNDVSKEMDLDLIKQNSQVERVIVDRI
SKDASGNVMSEYLVKWQGLSYAEATWEKDIDITFAQDAIDEYKARDAAMAVQGKIVDHQR
KKGKASLRKLDEQPERLRGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSM
LGFLQNAQQIPGPFLVVVPLSTLSNWSKEFKKWLPDMNVIVYVGTRASREVCQQYEFYND
KKIGRPIKFNTLLTTFEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKN
KLLITGTPLQNSVEELWALLHFLDPHKFESKDDFVQNYKNLSTFNENELANLHMELRPHI
LRRVIKDVEKSLPPKIERILRVEMSPLQKQYYRWILERNFHDLNKGVRGNQVSLLNIVVE
LKKCCNHPFLFESADHGYGGDTSMNDISKLERIILSSGKLVILDKLLTRLHETKHRVLVF
SQMVRMLDILAEYLLLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLG
INLATADTVIIFDSDWNPQNDLQAMSRAHRIGQREVVNIFRFVTSKSVEEDILERAKKKM
VLDHLVIQKLNAEGRLERKETKKGSHFDKNELSAILRFGAEELFKEDRNDEESKKRLLGM
DIDEILERAEKVEEKVGEEEGNELLSAFKVANFCNAEDDGTFWSRWIKPDAIAQAEDALA
PRAARNTKSYAETSQPERSNKRKKKGSDSQELQERVQKHRKAEYSAPLAPMIEGATAQVR
GWSYGNLPKRDALRFSRAVMKFGNENQITLIAEEVGGAVAAAPIDAQIELFQALVEGCRE
AVEVGNAEPKGPLLDFFGVPVKANDLFNRVQELQLLAKRISRYEDPIRQFRVLMYLKPSN
WSKGCGWNQTVDDARLLLGIHYHGFGNWERIRLDERLGLTKKIAPAELQHHETFLPRAPN
LKERANALLEMEVAAIGGGKTASTKAGRKASKKEKQNTLKVSISRGRDTKGKPGSPKVGF
KMSRDRHKRPQKVELVKEEGEMSDNEGVYEHFKEVKWMEWCEDVMIDEIKTLRRLQRLQT
TSADLPKDKVLSKIRNYLQLLGRKIDEIVLEHEDELYRQDRMTMRLWNYVSTFSNLSGER
LHQIYSKLKQEREEEGGDGPSRINGAIPGHVDRDGDPNYPPFSHSVEKQRGYKNAVAYQT
SQPIHKGIDAAKFEAWKRRRRAEGDIHPQLQPSAQRPTNNGIQLVDPNSLGILGAGPSDK
CLVNNERPYRMH
NT seq
5259 nt
NT seq
+upstream
nt +downstream
nt
atgatggcattttttcggaactattcaaatgacacagacgcacacgatgtattggaagag
aaaagccagggacaaagcattggtaggattcgaagttcagtaggaaatgatgatgtgggt
gggagtgggacttattccgaaagagaatttgatattaatgcacactatcaaagtgacggg
gagccagatggttctgttaggctccataatgaggtggctgctgctagcggtgctggtgtt
tcaaattcaaattttcagccaccgggaagaagagtagctcctggaaaatggggttcgact
ttttggaaggactgtcagcctatggaccaccagggtggatcggactctgggcaggattcg
aaatctgaccacaggaatttggaagcttcggaatataattcatcagatgacagggatgat
aggttggatgtggaagatgatgaggcgcagaaaggcaaggctcagaggggcaattctgat
gttcctgcagatgagatgttatctgatgaatactatgaacaggatggcgaagagcagagt
gataccatgcattatacaggctttagcaattctgttgggttaaatactaggccaaagtct
aagcctgcttctcttagtagcactatgtccgggagttcaagagctttaaataacttcaac
tatgatgatgaggaaaacaatcatgatgttgattatgaagaggaggaggaagaagatgaa
gatgaccctgatgatgcagattttgagcctgactatgatgctgcaactggtcgtgctggg
aatcaggtcattgatttggacaaagactgggatggtgaagattctgaggaagaagacaat
agtgatggtgatgtagatatttcagatgaagaggattcttattatagaaaaaaacctaaa
ggagtgcaacatgttaaagttggacttaatgtcaaaccctctaaagaacgtaaatatacc
aatcgacaaagaagagggaaatcatcatttgatgagaatgaatgctcagctgaggattct
gacagtgaaagcgtccatgatttcaagagcattgctagaagaggtggaaatcaccgtata
agtagtgctcgttctaatacgttcacaagcatgggaagaaacagtgaggtccgtacttct
agtaggtctgtacggaaagtatcatacgttgagagtgaaggaagtgaagaaattgaggaa
gtcaagaagaagaagactctaaaggatgaagctgaagaggaagatggtgactcaattgaa
aaggtgttatggcatcaaccaaagggcatggctgatgatgctattagaaacaatagatct
acagagcctgttctgctaagccacttgtttgattctgaaccagattggaatgagatggaa
ttcctgattaaatggaaggggcagtcacatcttcattgtcaatggaaaccgttttttgag
ctacaaaatcttagtggttttaagaaggttctaaattacacaaaaaaggtgatggacgat
gcaaaatacaggaaggcgctgtcacgtgaggagattgaggtaaacgatgtaagtaaggaa
atggacttggatctaatcaagcaaaatagtcaggtggagagagtaattgttgatcgaatc
agtaaggatgcctctgggaatgtcatgtcagagtatttggtcaagtggcagggattgtct
tatgcagaagcaacatgggaaaaggatatagatattacatttgctcaagatgctattgat
gagtataaggctcgtgatgctgcaatggctgtgcagggaaaaattgtagatcaccagcgt
aagaaaggcaaagcaagtttgcggaaacttgatgaacaaccagagcggttaaggggagga
aagcttcgtgattatcagcttgagggtttgaattttcttgttaacagttggagaaatgat
actaatgtcatcttagctgatgaaatgggtcttggtaaaactgtccagtcggtatctatg
cttggtttcttacagaatgctcaacaaatccctggaccatttcttgtggttgttccatta
tcaaccttatcaaactggtctaaagaattcaagaagtggcttccagatatgaatgttatt
gtatacgttggtactcgtgcaagccgagaggtttgtcagcaatatgaattttacaatgac
aagaaaattggcagacctataaaatttaataccctgttaactacgttcgaggtagttctg
aaggataaggcagtgctgtctaagataaagtggaactatttgatggttgatgaagctcat
aggttgaagaatagtgaggcacagttatacacaacgctttcagaatttagtactaagaac
aagttgctaattactggaactccattacagaacagcgttgaggagctatgggctctgctt
catttccttgatcctcacaagtttgaaagtaaggatgattttgttcaaaattacaagaac
cttagcacatttaatgaaaatgagcttgctaatcttcacatggaattgaggcctcacatt
cttcgaagagttatcaaggatgtggagaaatctttgcctccaaaaattgagcgtatcctt
agggttgagatgtccccgcttcagaaacagtactataggtggattttggaacgcaacttc
catgacttaaacaagggtgttcgtggcaatcaggtctcacttttaaatatagtggttgaa
ttgaagaaatgctgcaatcatccctttctgtttgaaagtgctgatcatggttatggcggg
gacactagcatgaatgatattagtaaattggaaagaattatattaagcagtgggaagcta
gtcatacttgacaagttgcttaccaggttgcatgaaacaaagcatagagttctagtcttt
tcccagatggttagaatgctggatatactagccgagtacttgttgctcagaggattccaa
tttcagaggcttgatggtagtacaaaggcagagttacgacagcaagctatggatcatttc
aatgcacctggaagtgatgatttctgcttccttctttctactcgggctggtggccttggt
ataaaccttgcaactgcggacactgttataatatttgattctgactggaatccccaaaat
gacttgcaggcaatgagtagagctcatagaattgggcaacgtgaagttgtcaacattttc
agatttgtgactagcaaaagtgttgaggaagacatcctggagcgagctaaaaagaagatg
gtgcttgaccatttggtgatccaaaaattaaatgctgagggtagattggagagaaaagaa
acaaagaaagggagtcattttgacaagaatgagctatcagcaattttgagatttggggct
gaagagttgttcaaggaggacagaaatgatgaagaaagcaaaaaaaggctgttaggtatg
gatatagatgaaattcttgaaagggcagagaaggttgaggagaaagtgggtgaggaggaa
gggaatgaattgttgagtgcttttaaggttgctaatttctgtaatgctgaagatgatggt
actttctggagtcgttggataaaaccagatgctattgcacaagctgaggatgctctggct
cctcgtgctgcaaggaataccaagagttatgctgagacaagtcaacctgagagaagtaac
aaaagaaagaagaagggctctgattctcaggagcttcaggagagagtacaaaagcaccgt
aaagcagaatattccgctcccttggcaccaatgattgagggagcaactgctcaagtgaga
ggatggtcttatgggaacctgcctaaaagagatgctctgcgcttttctcgagcagttatg
aaatttgggaatgagaaccaaatcactttgatagcagaggaagttggtggtgctgttgca
gcagctccaattgatgcacagattgagcttttccaagctttggttgaaggatgtagagaa
gcagttgaagtaggaaatgcagaacctaagggaccattattggacttctttggcgtccct
gttaaggcgaatgatctgttcaatcgtgtccaagaacttcagttgttagcaaagcgaata
agtcggtatgaagatcctataagacagttccgtgtgttgatgtaccttaaaccctctaat
tggtccaaggggtgcggatggaatcagacagttgatgatgcaagattgcttctgggaata
cactaccatggattcggaaattgggaaaggataagattagatgaaaggcttggcctcacg
aagaagattgctcctgctgaacttcaacaccatgaaacctttctgccacgagccccaaat
ttgaaggaacgtgctaatgcacttttggaaatggaagttgctgcaatcggtggtggtaag
actgctagtaccaaagctggtcgaaaggcttcaaagaaagaaaagcagaatactcttaag
gtatcaatatctcgtggaagagatacgaaggggaaaccgggttctcctaaagtcggtttt
aaaatgagtagggacaggcataagaggcctcagaaagttgaactagttaaagaagagggc
gaaatgtctgacaatgagggggtatatgagcactttaaagaagtgaagtggatggagtgg
tgtgaagatgttatgattgatgaaataaaaacccttcgtcgtctccaaagattgcagact
accagtgctgatcttcccaaggataaggtgctttcaaaaattcggaattatctgcagctt
cttggaaggaagatagatgaaattgtcttggaacatgaagatgagctctatagacaagat
aggatgactatgcgcttatggaactatgtctctacattctcgaatctttctggtgagagg
ctgcatcagatttattccaaacttaagcaggagcgggaagaagagggaggggatggaccc
tcccgtatcaatggtgctatacctggtcatgttgatagagacggtgaccctaactacccc
cctttctcacattctgttgagaagcaaagagggtacaagaatgcagtggcatatcaaaca
tcacaaccaatacacaaaggcattgatgctgcaaagtttgaagcttggaaacgacggcgg
agagcagaaggggatatccatccccaactccagccctcggctcaaagacctacgaacaat
ggtatccaattggtagatccaaactccttggggattcttggggcaggaccatcagataaa
tgtcttgttaataatgagagaccgtatcggatgcattaa
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integrated database retrieval system
