KEGG   Gossypium hirsutum (upland cotton): 107891439
Entry
107891439         CDS       T04793                                 
Name
(RefSeq) RNA-binding protein Y14-like
  KO
K12876  RNA-binding protein 8A
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03013  Nucleocytoplasmic transport
ghi03015  mRNA surveillance pathway
ghi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107891439
  09122 Translation
   03013 Nucleocytoplasmic transport
    107891439
   03015 mRNA surveillance pathway
    107891439
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107891439
   03041 Spliceosome [BR:ghi03041]
    107891439
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     107891439
Spliceosome [BR:ghi03041]
 Complex C
  Other components
   EJC/TREX
    107891439
SSDB
Motif
Pfam: RRM_1 RRM_3 RRM_5
Other DBs
NCBI-GeneID: 107891439
NCBI-ProteinID: XP_016671733
UniProt: A0A1U8I689
LinkDB
Position
D09:39896960..39900202
AA seq 199 aa
MANADVEAVDFEPEEDDLMDEDAAGDASPQAPMPKLKSAITGGASASLSAPKKTKGRGFR
EEDADRHSRLASRDFESLGTDGGLGPQRSIEGWIILVSGVHEEAQEDDLHNAFGEFGEIK
NLHLNLDRRTGFVKGYALIEYEKFEEAKNAITTMDGAELLTQTINVDWAFSNGPSVGAFK
RKNMRSGRTHRSRSPRRRY
NT seq 600 nt   +upstreamnt  +downstreamnt
atggccaatgctgacgtggaagcggtggatttcgagccggaggaagatgacctcatggac
gaggacgccgccggcgacgcctcccctcaagctcccatgcctaagctcaagtccgccatc
actggcggtgcttcagcctctctttctgcccctaagaaaaccaagggccgtggcttccgc
gaggaagatgctgaccgccactcccgtctcgcctctcgcgacttcgagtcccttggcact
gatggtggcctcggtccccagagatctattgaaggatggattattttggtcagtggtgta
catgaggaagcccaagaggatgatttgcacaatgcatttggtgaatttggtgagatcaag
aatttgcatttaaatcttgatcgccgcactggatttgtcaagggatatgcactgattgaa
tacgaaaagtttgaagaagcaaagaatgccataacgacaatggatggagcagaacttctt
acacaaaccatcaatgttgattgggcctttagcaatggacctagtgttggagccttcaaa
cgaaaaaatatgagatctggacggacacatcgctccaggagtcctaggagaagatactaa

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