Gossypium hirsutum (upland cotton): 107891444
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Entry
107891444 CDS
T04793
Name
(RefSeq) protein SMG7
KO
K14409
protein SMG7
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107891444
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107891444
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
107891444
mRNA cycle factors
Common to processing body (P body) and stress granule
107891444
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
107891444
NCBI-ProteinID:
XP_016671738
UniProt:
A0A1U8I694
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Position
D09:complement(39796867..39803076)
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AA seq
984 aa
AA seq
DB search
MMIVQMDKMSTAPSSRERAQCLYKKNIELENNRRKSAQARVPSDPNTWQQMRENYEAIIL
EDHAFSEQHNIEYALWQLHYKRIEELRAHYSAALTSARSKTSQGVKVPPRSDRLTKIRLQ
FKTFLSEATGFYHELILKIRAKYGLPFGYFSDDSESLIVMDKDGKKSAEIKMGLVSCHRC
LIYLGDLARYKGFYGDGDSKTREYAAASSYYLQAVSVWPLSGNPHHQLAILASYSGDEVV
AVYRYFRSLALDNPFSTARDNLIVAFEKNRHSCSQLTRDAKTSLVKEPAVSLSGKGRRKA
EAKPISKEANMDSRPPKEKESGTQDNLKSFCIRFVRLNGILFTHTSPETFADVLKLVSHD
LCELLSSGPEEKLSFGTDATENALFLVRLVSVLIFTVHNLKRESEAQTYAEIVQRAALLQ
NALTAIFELMGYVVERCLQLGDVSSSYTLPAILVFVEWLACCPDVATADSDVDEKQSITR
SLFWKHCLSFLNKILTIGPMCIDDDEDETFFNMSRYEEGETENLLALWEDFELRGFLPLV
TAHNILDFSRKRSFISDGDKEKKARVKRILAAGRALASVIRIDQKTVCFDSKAKKFLIGV
EPCEGVTFGSSTLMVANGVEHETPSEKINIGNMLPISPGNVAEDDDDEVIVFQPSVSEKR
IEVINSNRPPPETLKLDLSSCGGDRNFYGSTMSSLDSLRQHNTSDASPPLPASVGSIHSQ
QLQPVQMHASRWSVKEATSLSNSLRALTMLENGHLTKRVMQDNLGLPHPAAHSFAIQQPI
NTSAGGMYYSQKKVPETVIPSGIDTIVSSRVAADALASKTTSASQVGMHKNPVNGAVRHL
GPPPGFGPVPPKPPSESVSVSDLETPVMDDYSWLDGYRLASSLRGSGLDSSLNYASHGDS
LYVNNSSSGTGTISFPFPGKQVSTMQFQMEKQNGWQDYNTLDHRKFQHEQKLQQHQFMNG
NQQQFTSLPEQFQGQSMWTGRYFV
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgatgatagtgcagatggataaaatgtcaacagctccttcatccagggagcgtgcacag
tgtctttataagaagaatatagagctggaaaataatcgtaggaaatctgctcaggcacga
gtaccctcagatccaaatacctggcagcagatgcgtgagaactatgaggcaataattctc
gaggaccatgcattttctgagcagcacaatattgaatatgctttgtggcaattacattac
aaacggattgaggaactaagagcacattatagtgctgccctaacttctgccaggtcaaaa
acatctcagggcgtgaaagttcccccacggtctgacaggcttacaaaaataagattgcag
tttaagactttcctttcagaggcaacaggattttatcatgaattgattttgaaaatcaga
gcaaagtatggacttccatttgggtatttctctgatgattcagaaagcctaattgttatg
gacaaagatgggaagaaatctgctgagataaaaatgggtttggtgtcttgtcaccgttgt
ttgatatacttgggagacctagcacggtacaaaggattttatggagatggagactctaaa
acacgcgagtatgcagctgcttcaagttactacttgcaagctgtgtcagtttggccctta
agtgggaatccacatcatcagctagctatattggcatcctactcgggagacgaggtggtg
gctgtttatcgatatttccggagtctggcattggataaccccttttcaactgctagggat
aacttgattgtggcttttgagaagaaccgtcatagttgctcacagcttactcgagatgct
aaaacttccttggtcaaggagcctgcagtgtcgttatcgggaaaaggtagaaggaaagcg
gaagcaaaacctatatctaaagaagccaacatggattcaaggcctcctaaggagaaagaa
tctggtacccaggataatttgaagtccttctgcattcgatttgtgcgtctaaatggtatt
ctttttacacacacaagtccggagacttttgcagatgttcttaaattggttagccatgat
ttatgcgaacttctgtcttcggggccagaagagaaattgagttttggcacagatgctact
gagaatgcacttttccttgttaggttggtttcagttctcatatttacagttcacaatctg
aagagggagagtgaagctcaaacatatgctgaaattgtacagcgtgctgcgctgcttcag
aatgcattgacagccatttttgagttgatgggatatgtggtagagagatgtttgcagctc
ggggatgtttcttctagctacaccttaccagctattctggtttttgtagagtggctggct
tgctgcccggatgttgcaacagctgacagtgatgttgatgagaaacagtcgattactaga
tcactcttctggaaacattgcttatcatttctaaataagatcttgacaattgggccaatg
tgcatcgatgatgatgaagatgagacctttttcaatatgagcaggtatgaagaaggagaa
actgaaaaccttcttgcattgtgggaggactttgagttgcgagggttcttgcctcttgtt
acagcacataacattttggacttctcaaggaaacgttcctttataagcgatggcgataag
gaaaagaaagcccgtgtcaagagaattttagctgctgggagggctcttgctagtgtcatt
aggattgatcagaaaactgtttgttttgattcaaaagccaagaaatttcttattggtgtt
gagccttgtgaaggtgtcacattcgggtcttctaccctcatggtagcaaatggcgtggaa
catgaaaccccctctgagaagattaatattggaaatatgctgccaatctcacctggaaat
gttgcggaagatgatgatgatgaagtgattgttttccagccttctgtaagtgaaaagaga
attgaggtgatcaattctaacaggcctcctcctgagactttgaagcttgatctaagtagt
tgtggaggtgatcgcaatttctatggcagtaccatgtcttctcttgatagtcttcgccag
cataatacatctgatgctagtcctccactgcctgcatctgttggtagcattcactctcag
cagttgcagcctgttcagatgcatgcatctaggtggtcagtgaaggaagctacttcactg
tctaatagtttgagggctttgacaatgttggaaaatgggcatttaacaaaacgtgtgatg
caagataatctaggccttcctcatcctgctgctcactcttttgctatccaacaacctatc
aatactagtgctggcggtatgtactacagtcagaaaaaagtgccagaaactgtgatccca
tctggaattgatacaattgtgtcgtctagagttgctgctgatgctttggcttctaaaact
acctcagcttcacaagttgggatgcataagaatccagttaatggcgctgttaggcatctt
ggccccccaccaggttttggccctgttcctccaaagccaccaagtgaatctgtttctgtc
tcagatttggaaacccctgtgatggatgattatagttggctggatggatatcggttggca
tcatcattgagaggctctgggcttgatagttctctcaattatgcatctcatggagattcc
ctgtatgtcaataatagtagcagtggcactggaacaataagctttcctttccctggaaaa
caggtctcaacgatgcaatttcaaatggaaaagcagaacggctggcaggattacaatacc
cttgatcatagaaaatttcaacatgaacagaagctgcagcaacatcaattcatgaatgga
aaccagcagcagtttacctcactgcctgagcagtttcaaggacaatcaatgtggacagga
cgttattttgtgtga
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integrated database retrieval system
