Gossypium hirsutum (upland cotton): 107891493
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Entry
107891493 CDS
T04793
Name
(RefSeq) general transcription factor IIH subunit 2 isoform X1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03022
Basal transcription factors
ghi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107891493
09124 Replication and repair
03420 Nucleotide excision repair
107891493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107891493
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107891493
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
107891493
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
107891493
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Zn_ribbon_GTF2H2
VWA
Motif
Other DBs
NCBI-GeneID:
107891493
NCBI-ProteinID:
XP_016671808
UniProt:
A0A1U8I7U1
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All DBs
Position
D09:complement(39265096..39268845)
Genome browser
AA seq
413 aa
AA seq
DB search
MNNGAGRRINGAAEEDDDEDDVNGDLDAWERTYTDERSWESLQEDESGMLRPIDNQALYH
SQYRRRLRSLSSTAARIQKGLIRYLYIVIDLSRAASEMDFRPSRIAVIAKHVETFIREFF
YQNPLSQVGIVTIKDGVAHCLTDIGGSPESHINALMKKLECSGDSSLQNALDLVDGYLNQ
IPSYGHREVLILYSALSTCDPGDIMDTIQKCRKSKIRCSVIGLAAEMFICKHLCQETGGT
YSVALDESHFKELILEHAPPPPAIAEFAVANLIKMGFPQRAAEGSISICSCHKEAKVGAG
YTCPRCKAHACELPTECCVCGLTLVSSPHLARSYHHLFPIAPFDEVTSSHLNNPNCKLQR
NCFGCQQSLLDPGNKPGPAVVCPKCKRYFCLDCDIYIHESLHNCPGCDSLRHS
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgaataatggagcgggaagacggatcaatggtgcagcggaagaggatgatgatgaagat
gacgtgaatggggatcttgatgcgtgggagagaacttacactgatgagaggtcatgggaa
tctttgcaagaggacgaatcggggatgcttcgccccattgacaaccaggccctttatcat
tcacagtatcgccggcgccttcgttccctttcgtccactgctgctcggatacaaaagggt
ctcattcgttatctatacattgttatcgatctttctcgggcagcttcagagatggatttc
cgaccaagtcgaattgctgtcattgcaaaacatgttgagactttcatccgggagttcttt
taccagaatcctcttagtcaagttggtattgtgactataaaagatggggttgctcactgc
ttaacagatattggtggtagtcccgagtctcatatcaacgctttgatgaagaagttagaa
tgttcaggtgattcctccttacagaatgcattggatcttgtagatgggtatctgaatcaa
attccatcatatggtcatcgtgaagttctcatattatattctgctctcagtacttgtgat
cctggagatataatggacaccattcagaaatgtaggaaatctaaaataagatgttcagtt
attggcctcgctgcagaaatgtttatatgcaaacatctttgccaggaaacaggaggaacg
tactctgttgcactggatgagtcccactttaaagagctaatattggaacatgcaccacca
ccaccggccatagcggaatttgcagttgctaatttgatcaagatgggattcccacaaaga
gcagctgagggttctatatcgatttgttcatgtcataaagaagctaaggtaggtgcaggt
tacacttgtccaagatgcaaagcccatgcatgtgagcttcctaccgaatgctgtgtctgc
gggttgacactcgtgtcttcaccccatttggctagatcatatcatcatctctttccaata
gcaccatttgacgaggtgacctcatctcatttaaacaatccaaactgcaaactgcaaaga
aattgtttcgggtgccaacaaagcctccttgatccgggaaacaaacccgggcctgccgtt
gtgtgcccgaagtgcaaacggtacttctgcctggattgtgacatttacattcatgagagt
ttgcacaattgtcccggttgtgacagcttgaggcattcctag
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