Gossypium hirsutum (upland cotton): 107891508
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Entry
107891508 CDS
T04793
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04120
Ubiquitin mediated proteolysis
ghi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107891508
04120 Ubiquitin mediated proteolysis
107891508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107891508
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107891508
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107891508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
FlxA
zf-RING_16
GTP-bdg_M
zf-RING_11
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
107891508
NCBI-ProteinID:
XP_016671826
UniProt:
A0A1U8I0Q5
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All DBs
Position
D09:39038849..39046589
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AA seq
545 aa
AA seq
DB search
MMRLRTYAGLSLVTTLAVIYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVVMCILWQL
TKRLFLGSLREAEVERLNEQSWREVMEILFAITIFRQEFSVPFLAMVTALLLIKALHWLV
QKRVEYIETTPSVPKLAHVRIISFLGFLLLLDSLFLYSSVKFLIQTRQASVSIFFAFEYM
ILATTTVSTFVKYVFYVSDMLMEGQWEKKAVYTFYLELIRDLLHLSIYLCFFLVIFMNYG
VPLHLIRELYETFRNFKIRVADYLRYRKITSNMNDRFPDATPEELSASDATCIICREEMT
LAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGASSSGGQHGTWSDAPRQVGTG
SSTSSATQGPGVGMATDNLTPHQARLQAAAAAASIYEKSYVYPSANALVWSPGNPVLPGS
YAPLADTMKVEHSGESPSIGHQQFAIPGGQSNLPFPQFPNCVFVPFQLPGANGNSGGGGS
GSNQNISDSQLEAQKKIIEQQIEVLQRQLQLLQMHKPKTEESSDIGLTTSSDSKGKGVAS
SSSEE
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggctgcgaacatatgctggtctcagtttagtcacgacactagcagttatatat
catgcattcaacagcagaggccagttttatcctgctatggtttatttatcaacctctaag
atcagcttagtgttgcttctcaacatgggccttgtagttatgtgtatcttatggcaatta
accaaacggctattccttgggtctcttcgagaagctgaggttgagcggttgaatgagcaa
tcatggagagaggtcatggagatcctctttgcaatcactatctttcggcaggaattctct
gttccatttcttgcaatggttactgctctattgttaatcaaggctttgcattggttggtg
cagaagagggttgagtacattgaaacaaccccttccgttccgaagttagcgcatgttcgg
atcatttcatttctgggttttcttcttctgcttgattctctgtttttatacagttctgtc
aagtttctgatccaaacacgacaagcttcagtttccatcttctttgcatttgagtacatg
atactggcaacaacaacagtgtcaacttttgtaaaatatgttttctatgtgagtgacatg
cttatggaagggcaatgggagaaaaaagctgtatataccttctacttggagctcatccga
gacttgcttcacttgtctatatacttgtgcttctttcttgtgattttcatgaattatggt
gtacctctgcacttaatacgggagctttatgagacatttaggaattttaaaattcgtgtt
gctgattacttgcggtatagaaagatcacctcaaatatgaatgatagattcccggatgca
acccctgaagaactctctgcaagtgatgcaacatgtattatatgtcgtgaagagatgacc
ttagcaaagaagttaatttgtggacatctttttcacgttcactgccttcgatcatggctg
gagaggcagcatacctgtccaacctgcagagcacttgttgtaccacctgaaaacggagca
agttcatctggagggcaacatggaacttggtcagatgctcctcgacaagtgggaacaggg
tccagcacgagttcagctacacaaggtcctggtgttgggatggccactgataatttgacc
cctcatcaggcgaggctgcaggctgctgctgctgcagcatcaatatatgagaaatcctac
gtctatccttctgcaaacgcattagtttggtctccaggaaaccctgtacttccagggtct
tatgcgccattggccgacaccatgaaggtggaacatagtggggaaagcccatccattgga
catcaacagtttgccattcctggtggacagtcaaacttgccctttccacaattcccaaac
tgtgtttttgttcctttccagttacctggtgccaatggaaactcaggaggaggaggatca
gggagtaatcagaatatttcagattcccagttggaggctcagaagaagattattgaacag
cagattgaggtactgcaacgtcaacttcaactcttgcagatgcacaagccaaaaactgag
gaaagctcggacattggtctcacaacctcatcagatagtaaaggaaagggcgttgcatct
tcttcttctgaagagtaa
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