Gossypium hirsutum (upland cotton): 107891552
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Entry
107891552 CDS
T04793
Name
(RefSeq) uncharacterized protein LOC107891552 isoform X1
KO
K06100
symplekin
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107891552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107891552
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107891552
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107891552
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
107891552
U7-dependent histone pre-mRNA processing factors
107891552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_EZ
HEAT_2
Motif
Other DBs
NCBI-GeneID:
107891552
NCBI-ProteinID:
XP_016671877
UniProt:
A0A1U8I0W4
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All DBs
Position
D01:complement(64826321..64836352)
Genome browser
AA seq
1337 aa
AA seq
DB search
MVGIMNPVSREKLESLSSSVKFAIDLGSKLELCRQLKHDLLEEDAADLSEFLPRIFDLYS
DPSGPVRKFATEIIGEIGVKHLEFVPELAPFLITVLEDATPAVARQSVACSIDLFRHTLE
KIAIRGLYSSELDSDLESSWSWMLKLKEKIYSIAFQPGSGGIRLVALKFVEAVILLYTPN
PNGSLEPPPNEGTSIEFNITWLRGGHPLLNVGDLSIEASQRLVLLLDQLRFPAVKSLSTS
VIVVIINSLSAIAKKRPAYYGRILPVLLSLDPPSFVIKGVHVYGAHHALKNALLSCLKCT
HPSAAPWRERILGALKEMKAGGLADLALNQVHKINGSVEEAKDDSLLIKEEKPLTKTYDA
AGSNVGRKRSGTEGSSDLAEKDEVAGKRVKATPSASEESTKELNRNITVSQGDISSTQSS
TRKVDVDTGPVQQLVGMFGALVAQGEKAVGSLGILISNISADLLAEVVMANMCNLPPTHP
HTDTDDELLEDMCIVGSDTQAKYPPSFLADVISLSSTFPPIASMLNSQQSVPNKIVIQKT
EGEEEVDVVADPNSALAYAGMAHEDENALLATDLPVSSNIVLPGMKIDPPTPSDIHDTGN
LESGIPGLDSSFRNDGLSDTQAASSLVSTDIEDASQEQSTSFGGKSPLHVLPSISIDRSE
ELSPKAAVTDSRSMVSSTATSVVSSCPFVLPKMSAPVVNLSEDQKDDVQKLAFVRIVEAY
KQIAVAGGSQVRSSLLAYLGVELPSELELQKVLREHILSDYINHEGHELTLRVLYRLFGK
AEDESDFLSCTTAASAYETFLLAVAETLRDSFPPSDKSLSKLLGEAPRLPKSVLNLLGCL
CSPGISEKAEESQSGDRVTQGLSTVWSLILLRPPIRDVCLKIALQSAVHHLEEVRMKAIR
LVANKLYPLQSIAQQIEEFAREMLLSVVNVDATERTGAEGLISESHKDSDLEKSSNEHQS
MSSISKDISADVHQSETSHSGSSPSVPEAQRCMSLYFALCTKKHSLFGQIFIIYGSASKE
VKQAIHRHIPILVRTMGLSSDLLEIISDPPSGSENLLMQVLQTLTEGTVPSAELIFTIKK
LFDSKLKDVEILVPVLPFLPGDEVLLLFPHLVNLPLDKFQAVLTRLLQGSAHSGPVLTPA
EVLIAIHGIVPERDGIPLKKVTDACNACFEQRHIFTQQVLAKVLNQLVERIPLPLLFMRT
VLQAIGAFPALVEFIMEILSRLVSKQIWQNPKLWVGFLKCALLTKPQSFSVLLQLPPPQL
ENALNRTAALKAPLVAHASQQNIRNSLPRSMLAVLGLAPDTQSSSQAQTSQAHTRDTSNS
EKDAAVTEKSKESSSAS
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atggtagggatcatgaatccagtttcgagagaaaagctcgagagtttatccagctcagtg
aagttcgctattgacttaggttccaagctagagctttgtcgtcaactgaagcatgattta
ttggaggaagacgctgctgatttgtccgagttccttcctcgtatcttcgacctttactct
gacccgtccggtccggttcgcaagtttgctaccgagattattggtgaaattggagtgaag
caccttgaatttgtacctgaacttgcaccatttctgataactgttttggaggatgctaca
cctgctgttgctcgacaatctgttgcttgcagcattgatttgtttcgccatactctcgaa
aagattgcaattcggggtctttactccagtgaattggacagtgatcttgaatcatcgtgg
tcatggatgttaaagttgaaggagaagatatattctatagctttccagccaggaagtggt
gggataagattggtggcactgaagtttgttgaagcagttattcttctttatactcctaac
cctaatggctctctggagccccctcctaatgaaggtacctctatagagtttaacataact
tggcttcgtgggggccatcctttactcaatgttggggatttgtcaattgaagctagccaa
cgtttggttttgttgcttgatcagcttagatttcctgcagtaaaatctctctccacctct
gtgattgttgtgattattaacagtctttcagcaattgcaaagaaaaggcctgcatattat
ggacgtattctaccagttttgctcagtttggatcccccaagctttgttatcaaaggggtt
catgtctatggagcacatcatgctttgaaaaatgccttactctcatgcttgaaatgcacg
cacccgagtgctgcaccgtggcgggaacgtatacttggtgccttgaaagagatgaaagct
ggaggactggcagatctagctctcaatcaagttcataaaattaatggaagtgtagaagag
gcaaaagatgattctttgcttattaaggaagaaaagcccttgactaaaacatatgatgct
gctggtagcaatgtgggtaggaaaagatctggaactgagggcagtagtgatttggctgaa
aaagatgaggtggctggcaaacgtgtcaaggcaacacctagcgcctcagaagagtcaaca
aaagagttaaacaggaatataaccgtgtctcaaggtgatatttcatcaactcaatctagc
acaagaaaagtagatgttgataccggaccagtacagcaacttgttggcatgttcggtgcc
ttggttgctcaaggagaaaaagctgtgggatctttggggattcttatttcaaacatatct
gctgacttgctggctgaggtagtgatggctaacatgtgtaaccttcctcctacacatcct
cacactgacactgatgatgaattgctggaggatatgtgcatagttggaagtgacactcaa
gccaagtatccaccgtcatttttagctgatgtcatttcactatcaagtactttcccgccg
atagcctcaatgctgaactcccagcaatcagttcccaataaaatagtgatacagaaaaca
gaaggggaggaagaggtggatgttgtggctgaccctaatagtgctcttgcatatgctgga
atggctcatgaagatgaaaatgctctcttggccactgatttacccgtttcgtctaacatt
gttttgcctggaatgaagattgatccacctactccatctgatatccatgatacaggcaat
cttgaaagtggcataccgggtttggattcttcttttcgtaatgatggactgtcagatacc
caagctgcttcctcattagtctctactgatatagaagacgctagtcaagaacaatctaca
agttttggtggaaagtcacctttgcatgtacttccatcaatttcaatagataggtctgag
gagcttagtccaaaagcagctgttactgattccaggagcatggtttcctcaacagcgact
tctgttgtttcatcctgtccttttgtcttgcccaagatgtcagcacctgttgtcaatctt
tccgaggatcagaaggatgatgtgcaaaagttggcttttgtacgaatcgttgaggcatat
aagcaaatagcagtagctggaggctcacaagttcgttcttctctgcttgcttacctgggg
gttgagttgccatcagagttagaactacagaaggttcttcgagaacacattttgtcagat
tatataaatcacgagggacatgagttgacattgcgtgtcctctataggttgtttggaaag
gcagaagatgaaagtgatttcctctcatgtacaactgctgcttctgcatacgaaacattc
cttctggctgtcgctgaaactcttagggactcttttccgccttcagacaaatctttaagt
aaactacttggcgaggctcctcgcctgcctaagtcagttttgaatttattagggtgtctg
tgttcacctggaatttcagagaaagctgaggagtcacaaagtggagatagagttactcaa
ggcctcagcactgtatggagcctaattctattgagacctcccattcgagatgtgtgcttg
aaaattgctttgcagagtgctgttcatcacttggaggaagtccgaatgaaagcgatacgc
ctggtagcaaataagctgtaccctttacaatctattgctcaacaaatagaagaatttgca
agggaaatgctgctctctgtagtaaatgttgatgctacagaaagaacaggtgctgaagga
ttaatcagtgaatcacataaggattctgatttggaaaagtcatcaaatgagcatcagtca
atgagttccattagtaaagacatctctgctgatgttcatcagtcagaaacatctcatagt
gggtcatccccttctgtccctgaggctcagcggtgcatgtctctgtattttgctctttgt
acaaagaagcactctctttttggccaaatatttattatctacggtagtgcgtcgaaggaa
gttaagcaggcaatccatcgtcatattccaatactagtccgtactatgggcttgtcatct
gaccttcttgaaattatttcagatcctcctagtggaagtgagaatcttctgatgcaggtt
ttgcagacactgacagaagggacagttccttctgcagaattgatatttaccattaagaag
ttatttgattcaaaactgaaggatgttgaaattctagttccagtattgccattcctacca
ggagatgaggttttgctgcttttcccccatcttgtaaatcttccgctggataagttccaa
gctgtgcttacccgtttgctacagggatctgctcactctggtccagtgctcactccagct
gaagtattaatcgctattcatggcattgttcctgaaagagatggaattcccttgaagaag
gtcactgatgcatgtaatgcttgttttgagcaacggcatatattcactcagcaggttctt
gcgaaggtcttaaatcagttggttgagcggattcctcttcctttgttgtttatgcgtacc
gtattacaagccattggtgcttttcctgcactggtggaattcataatggagattctttct
cgtcttgtaagcaagcaaatatggcaaaacccaaagttgtgggtaggatttttgaaatgt
gcactcttgacaaagcctcaatctttcagtgtgctgcttcagctacctcctccacaactt
gaaaatgcactgaacaggactgcagcactcaaagctcctttggttgctcatgctagccaa
cagaatattcggaattcacttcctagatctatgttggcagttttgggacttgctccggat
actcagtcctccagtcaggcacagacaagtcaggctcacaccagagatacaagcaactcc
gagaaggatgctgcagtgacagagaaatcgaaagaatcatccagtgctagctga
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integrated database retrieval system
