Gossypium hirsutum (upland cotton): 107891943
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Entry
107891943 CDS
T04793
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107891943
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107891943
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107891943
mRNA degradation factors
5'-3' decay
Decapping complex
107891943
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
107891943
NCBI-ProteinID:
XP_016672357
UniProt:
A0A1U8I299
LinkDB
All DBs
Position
D09:complement(32767159..32775234)
Genome browser
AA seq
1368 aa
AA seq
DB search
MASNPNPQPQSGGGGSGGFDLNKLFKPSSSPMLQHQHLQNVNVTATSPSPTPSPNTSNLT
TSPSFPAQSSTPPPPPYLTPSSSYPPPTGPYPFHHYLPYPPPPQPQHPLHPHPNPTGPIP
YHPQPQLPTPPTSGNDILMAFFGTQAQSLAPAPVPSAPPLNMTVTPSAPSPSPSPARLLS
SKVPKGRHLSGTNLLYDIHVRLPSEVQPQLEVTPITKYASDPGLVLGRQIAVNRNYICYG
LKLGNIRILNINTALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRVFVWRINEGPDDE
DKPQIFGKVVIALQIVGQESSKHPRVCWHPHKQEILMVAIGNRILKIDTIKVGKLDGFSA
EEPLNFSVDKLIDGVQFVGKHDGEITELSMCQWLTTRIASASVDGTVKIWEDRKPIPLAV
LRPHDGHPVYSATFLTAPHRPDHIVLITGGPLNREVKIWASSGEEGWLLPSDGESWQCMQ
TLELRCSAESEVDNAFFNQVLALPHAGLFLLANAKKNAIYAVHIEYGHNPAATCMDYIAE
FTVTMPILSLTGTSDSLPGGEYTVQVYCVQTQAIQQYALDLSQCLPPPLENTDLDKTDSN
VAHVSDAMNSDGSASQELSHGYKPTEKTINYSSSESAAMASCPQNVASSEVTFISESAVS
GMEIKPSALLSGSSAENVHIATPPLPLSPRLSWKSSGFGNPSSVDHVNRSAPDHSVDHKV
DTVRENNVEVPYAGESLQKGEDIAVFKHPTHLVTPSEILSTVSSLTENAQISQAINEGEA
AIKDVVKNDAESVEVEVDVLGETKYSQVSRTTVGDNKEKAFYSQASDLGIQMARDFCVES
YGIEGAQQANHLGVLVQADRLTNAGDGGDQNVIKNAPPKVGETDTAITGSPSPASAKGKK
QKKKNSQVSVPSSPSASPYNSTDSSNEPGCSSGALSADANFPQLLAMRDMLEQSLSVQKE
MQKQMNAIVSAPVNKEGKRLEASLGRSIEKAVKANTDALWARIKDENAKQEKLERDRMQQ
ITNLITNCLNKDLPAMFEKSLKKEIAAVGPVVARAISPTLEKSISSAITESFQKGIGERA
VNHLEKSVSSKLEATVARQIQAQFQTTGKQALQDALRSSLETSVIPAFEMSCKSMFEQID
VTFHKGLIEHTGTAQQQFENSHSSLAAALQEAIKSATSITQTLSGELANAQRNLLAIAAA
GGNSNAGNPLVSQLSNGPLTHLHEMPEAHLDPTKELARLIAEKKYEEAFTSALHRSDVSI
VSWLCSQVNLQGILSMKPCPLSQGVLLALFQQLACDINKETSRKLVWMTDVAVAIIPSDP
TIAMHVVSIFRQVSQIVDHLQSMSTTSASETASIRVLKFVINSVLNCK
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaatcccaatcctcaaccgcaaagtggcggtggtggcagcggtgggtttgat
ttgaacaagctgtttaaacccagttctagccctatgttgcagcaccagcatcttcagaac
gtgaacgtgacagcaacttctccaagtccaactccaagtcctaacacttcaaaccttact
acatccccatctttcccagcccaatcctcaacgccgcctccaccgccctatttgacgcct
tcttcctcttaccctccgcctactgggccttaccctttccaccactaccttccttaccct
cctcctcctcaaccccaacaccctttgcatcctcatcctaatcctactggacccattcct
tatcatccccaaccccaactccccacccctcctacttccggaaacgacattttgatggcc
ttctttggcactcaagctcagtcactagctcctgctcctgtcccttctgccccgcctctt
aatatgactgtcaccccatctgctccttcgccctctccctcacctgcccgactgttgagc
agcaaggtcccgaagggcaggcatctctctgggaccaatctcctttacgatattcatgtc
aggctacccagtgaagtacaaccccaacttgaggtcactcccattaccaagtacgcatct
gatcctggccttgttcttggtcgtcagattgctgttaataggaattacatttgctatggt
ctcaagcttgggaatatacgtatcctcaacatcaacactgccctccggtccttgcttcgt
ggccacactcagagagtaacagatatggctttttttgctgaggatgtccaccttttggcc
agtgcaagtgttgatggccgggtttttgtatggaggatcaatgagggacctgatgatgaa
gataagccgcaaatttttggcaaagttgttattgcccttcagatcgtagggcaagaatca
tcaaaacatccacgagtctgctggcatcctcacaaacaagagattttgatggttgctatc
ggaaatcgtatcctgaaaattgatacaatcaaagttggaaaacttgatggattttcagca
gaggaacctcttaatttctctgttgataagcttattgatggggttcagtttgttggcaaa
catgatggtgagattactgagttgtcaatgtgccaatggttgactacccgtatagcttca
gcttcagtagatggcacggtgaaaatttgggaagatcgtaagcccataccacttgcagtg
ttgaggccacatgatggacatcctgtttactcggcaacattcttgactgccccacatcgc
cctgatcatattgttcttatcacaggaggcccactaaaccgtgaagtgaagatatgggcc
tcttcaggtgaagagggctggttgttgcccagtgatggtgaatcatggcagtgtatgcag
acattggaattgaggtgttctgctgagtctgaggttgacaatgcattctttaatcaagtt
ttggcactgccccatgcaggcctgtttctgcttgcaaatgccaagaagaatgctatatat
gctgtacacatagaatatgggcataatcctgcagctacctgcatggattacatagctgaa
ttcactgtcacaatgcctatattgagtctcacgggaacaagtgatagtttgccaggtgga
gaatatactgtccaagtctactgtgttcaaacacaggctattcagcaatatgctttggac
ttgtctcagtgcctaccaccacccctggaaaacacagacttggataaaactgattctaat
gttgctcatgtttctgatgccatgaactctgatggttctgcttctcaggaattatctcat
ggatataaaccaactgagaagactataaactacagtagctctgaaagcgctgccatggcg
agctgtccacaaaacgtagcttcttcagaggttacattcatatctgagagtgctgtgtct
ggcatggaaattaagccaagtgctttgctgtctggtagtagtgctgaaaatgtgcacatt
gcaacacctccacttccattaagtccaaggttatcatggaagtcttctggttttggaaat
ccatcaagtgttgatcatgttaaccgctcagcacctgatcattctgttgatcacaaagta
gacacggttagagagaataatgttgaagtgccctacgcaggtgagagcttgcagaaaggt
gaagatattgcagtgttcaaacatccaacccatctggtaacaccatcagagatattgtct
accgtgtcttcattgacagaaaatgcacaaatcagtcaggctattaatgagggtgaggca
gcaatcaaagatgtggtcaagaatgatgctgaaagcgtagaggtagaagttgatgttctt
ggtgagactaaatattcacaagtctctcgtactacagttggagataacaaagaaaaggcc
ttctactcacaggcatcagatcttggcattcagatggctagagatttttgtgtagaaagt
tatggcattgagggagctcaacaagctaatcacttgggtgttttggttcaagcagataga
ctaactaatgctggtgatgggggtgaccagaatgtgattaaaaatgcccctccaaaggtt
ggtgaaacagacactgccatcactggttccccatctccagcttctgctaaagggaaaaag
cagaagaagaaaaattctcaagtatctgtcccatcttccccttcagctagcccatataat
tccacggattcatctaatgaaccaggttgcagttctggggctctgtcagctgatgctaat
ttcccccaattgctggccatgcgggatatgcttgagcagtcccttagcgtgcagaaggaa
atgcagaagcagatgaatgcaattgtctctgctcctgttaacaaagaagggaaaagactg
gaagcatccttgggcaggagcattgagaaagctgtaaaggcaaacacagatgctttgtgg
gcccgtatcaaagatgaaaatgcaaaacaagagaagttagagagagaccgcatgcagcag
ataacaaatttgatcaccaactgtttaaataaggacttgccagccatgtttgagaaatcc
ttaaagaaggaaatagctgcagttggccctgttgtggctcgtgctattagtcccactctg
gagaaaagtatatcttctgctattacagagtcattccagaaaggcattggggagagggca
gtgaatcatttggagaagtcagtcagttcaaaacttgaagcaacagtggccaggcaaatc
caagcacaatttcaaactactggaaagcaagcacttcaggatgcactgagatctagcttg
gaaacttctgttattccagcatttgagatgtcatgcaaatcaatgtttgagcaaattgat
gtcacatttcataaagggctaatagaacacacaggaactgctcagcagcaatttgaaaat
tcacattcttcccttgctgctgctctacaggaagctattaaatctgcaacttcaatcaca
caaaccttaagtggtgaactggccaacgcgcaacgaaatcttctagctatagcagctgca
ggtggcaactccaatgcaggaaatcccttggtttcacaattgagtaatggaccactgact
catctgcatgagatgcctgaggcacacttagatccaactaaagagttagcaagattgata
gctgaaaagaaatatgaagaagcattcacctcagccctgcatagaagcgatgtctctata
gtttcctggttgtgttctcaggttaatctgcaagggatattgtcaatgaaaccatgtcca
ctgagccaaggagtattgctggcactttttcagcaactggcttgtgatatcaacaaggaa
acaagtagaaagcttgtatggatgactgatgtagctgttgccataatcccctcggatccg
acaatagccatgcatgtggtatcaatctttagacaggtgtctcagattgtggatcattta
caaagcatgtccacgacatctgcctcagaaaccgccagcatccgggttcttaagtttgtc
ataaacagtgtgttgaactgtaaatga
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