Gossypium hirsutum (upland cotton): 107892006
Help
Entry
107892006 CDS
T04793
Name
(RefSeq) probable pectate lyase P59
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107892006
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107892006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107892006
NCBI-ProteinID:
XP_016672454
UniProt:
A0A1U8I9K1
LinkDB
All DBs
Position
A11:99063466..99065294
Genome browser
AA seq
438 aa
AA seq
DB search
MAAHSYSLFLFSLSFVVLIPTLQAHIAEYDDYWKARKLEAIENLNKAYHPNPEEMVHHYN
DQFAKTMIKLNNTRRVLKGTKENGPCEITNPVDSCWRCDPNWEKNRKRLADCAPGFARGT
TGGKEGEFYVVTDPSDDILNPKPGTLRHAVIQRRPLWITFKRSMIITLEQELIITSNKTI
DARGANVQIAKGAGITVQFVKNVIIHGLHIHHIITGTGGTIRDAEDHFGLRTASDGDGIS
VFGATNIWLDHLSVTNCSDGLIDVIEGSTAVTISNCHFTDHNEVLLFGASDSYTGDQKMQ
ITVALNHFGKGLVERMPRCRHGFIHVVNNDYTHWLMYAIGGSRNPTIISQGNRYTASSTL
ASREVTKRVYAPPEVWKKWNWISEGDHFENGAFFVSSGDPKASKKYGIDKMMPFNPGEMA
PKLTQYAGTLNCKPGKPC
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggctgctcatagttatagcttgtttcttttttccttgtcttttgttgtcttaatccca
acccttcaagctcacattgctgaatatgacgattattggaaggcacggaaattggaagcc
attgagaacctgaacaaggcttatcaccccaatcctgaggagatggtccaccattacaat
gaccaatttgccaaaaccatgattaagcttaataacaccagaagggtgttgaagggaacg
aaagaaaatggtccatgtgaaataaccaaccccgttgatagctgctggcggtgtgatcct
aactgggaaaaaaacaggaagaggctggccgattgtgcccctggatttgctcgtggtact
accggtggaaaggagggtgagttttacgtggtcactgacccttctgatgatattcttaac
cccaaacctggaactctgcgtcatgctgtcatccaaagaagaccactttggatcactttc
aaaagatccatgatcatcaccctggaacaggagctcattattacaagcaacaagaccatt
gatgctaggggcgccaatgtgcagattgctaagggtgctggtattacggtccagtttgtc
aagaatgtcattatccatggcctccatatccatcacattattacgggcacgggtggcacc
atcagggatgctgaagaccacttcgggttaaggactgccagcgacggagatgggatctct
gtattcggagcaaccaatatttggctcgaccatctttcagttaccaattgctccgatggt
cttatcgatgttattgagggttccactgccgttaccatttccaactgccatttcactgac
cacaatgaggtgttgttgtttggagcaagcgattcttacactggggaccagaagatgcag
ataaccgttgctttgaaccacttcggtaaaggattggtggagaggatgcctaggtgccga
cacggttttatccatgtcgtcaacaacgactacactcactggctcatgtatgctattggc
ggcagccgcaaccctacaattatcagccagggcaacaggtataccgcgtcatccaccctc
gcgtctagggaggtgaccaaaagggtgtacgcaccacccgaagtgtggaagaaatggaac
tggatatcagagggtgaccatttcgagaacggtgccttttttgtttcatccggtgatccc
aaagccagcaagaaatatggtattgacaaaatgatgcctttcaatcccggtgagatggcc
cccaaactcacccagtatgccggaacactcaactgcaaaccgggcaagccttgctaa
DBGET
integrated database retrieval system
