Gossypium hirsutum (upland cotton): 107892072
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Entry
107892072 CDS
T04793
Name
(RefSeq) single-strand DNA endonuclease 1 isoform X1
KO
K15338
holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107892072
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
107892072
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Gene cluster
GFIT
Motif
Pfam:
Chromo_SEND1
XPG_I
XPG_N
Chromo_2
Chromo
Motif
Other DBs
NCBI-GeneID:
107892072
NCBI-ProteinID:
XP_016672535
UniProt:
A0A1U8I2S8
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Position
D09:17650669..17655565
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AA seq
587 aa
AA seq
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MGVKNLWDVLEQCKKTLPLHHLHNKRVCIDLSCWIVQLQNVNKSHCPINNKLYLASLFHR
LRALIALNCSLIFVTDGSIPAIKLCTYRRRLNLRPEAQDGANSHSQNLSSLKRNMGSEFS
CMIKEAKLLGLALGVPCLDGIEEAEAQCALLNLESLCDGCFSSDSDTFLFGARTVYRDIC
LGEGGHVVCYEMDDIERQLGFGRNSLISLALLLGSDYTQGVRGLGLEAACQIVKSVGDND
ILRKIASEGLSFTRKKKNSKKQGQVKCNDKETTLSCKVNMNGGIQNSQTDDQYLRVVEAY
MSPKCHSADSDVVHRALVQRPFQHEQLQMLCSRFFEWPPEKTDEYILPKIAERDLRRFAY
LRSTSSQLDVNIPMKEVPVKCPVSAIIKRRKVHGRECFEVLWEELYGIKSSVVPSDLVES
ACPEKIKEFDDKRALEKKNQRKSRPTKSGKQCSLTEIDQKLQHLLLDIELGSESSPMASR
EVISDQMPTATEVNFMNRDPPIILDSYCRATMLCQETDITAPKHEVIDLLSPSPQVQSRV
VSRCTQMNDQHITIIDLSESETERSPEHVRKARELRLFLASIRDDFN
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgaagaatctgtgggatgtattggaacaatgcaagaaaacattgcctcttcat
catctccacaacaaaagggtatgcatagatctgtcttgttggatagttcagcttcaaaat
gttaacaaatctcactgccccatcaataacaagctttatctcgcctctctctttcaccgc
ctcagggctctcattgccttgaattgctctctcatttttgttactgatgggtcaattcct
gccatcaaattatgtacttacaggcggcgcttaaacttacgacctgaggctcaagatggg
gcaaattcacattcacaaaacttgtcttcgcttaaaaggaatatgggatctgaattctct
tgtatgatcaaagaagcaaaactccttggattagcacttggagttccatgtttagatggg
atcgaggaagctgaagcacaatgcgctttactaaacttagaatccttatgtgatgggtgt
ttctcttctgattcagataccttcctttttggtgccaggacagtgtacagagacatttgc
cttggcgaaggaggccatgttgtttgttatgaaatggatgatatagagcgacaacttgga
tttgggaggaactccttgatttctttggcccttcttcttggcagtgattacactcagggt
gtccgtggtcttggtctggaggcagcatgccagattgttaaatctgttggggacaatgat
attcttcgaaaaattgcatcggaaggactttcttttacaaggaagaaaaaaaattcaaag
aagcaaggtcaggtcaagtgcaatgacaaggaaactacattgtcttgcaaagtgaacatg
aatggaggcattcagaattcacaaacagatgatcagtatttgcgagtggtggaagcatat
atgagccccaagtgccattcagctgactctgatgtagtccatagagctcttgtacagcgt
ccattccagcatgagcaactgcagatgctctgttctcggttctttgagtggcctcctgaa
aaaacagatgaatacatccttcctaagattgctgaaagagatttacgacgatttgcttat
ttgcggtctacttcgtctcagttagatgttaacattccaatgaaggaggtgccagttaag
tgtcctgtatcggcaattatcaagcgccgaaaagttcatggaagagaatgttttgaggtg
ctgtgggaagaactttatggaattaaaagctctgtagtgccctcagatcttgtagagagt
gcttgtcctgaaaagatcaaagagtttgatgataagagagcactagagaagaaaaatcaa
cgtaaatcaagaccgacgaaatcgggaaaacaatgttctctgaccgaaatagatcagaaa
ctgcaacatctgttgcttgacatcgagttagggagtgagtcgagtcccatggcttcaaga
gaagttatatcagatcaaatgccgacagcaaccgaggttaatttcatgaaccgagatccc
ccaatcattttggattcctattgcagagctacaatgttatgccaggaaaccgacattact
gctccaaaacatgaagttatagatcttttgagcccttccccgcaagtgcagtcccgggtt
gtttctagatgcactcaaatgaatgatcaacacattactataatcgatttgagtgaatcg
gaaactgagagatcacctgaacatgtaaggaaagcaagagagcttagactgtttcttgcc
agcattcgagatgacttcaattga
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