Gossypium hirsutum (upland cotton): 107892218
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Entry
107892218 CDS
T04793
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107892218
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107892218
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107892218
NCBI-ProteinID:
XP_016672723
UniProt:
A0A1U8I900
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Position
D09:complement(10561997..10563576)
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AA seq
407 aa
AA seq
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MGSSTFSYIFHILFISLLVPNLASSSPVQDPEFVVDEVHKSINASRRNLGYLSCGTGNPI
DDCWRCDPNWEKNRQRLADCAIGFGKHAMGGKNGRIYVITDAGDDDPVNPRPGTLRHAVI
QDEPLWIIFKRDMVITLKQELLMNSFKTIDGRGASVHISGGPCITIHYVSNIIIHGIHIH
DCKPGGSTIIRDSPHHAGHWTPSDGDGVSIFGSKNIWVDHCSLSNCHDGLIDVIHGSTAV
TISNNYMTHHDKVMLLGHSDSYMQDKNMQVTVAFNHFGEGLIQRMPRCRLGYFHVVNNDY
THWEMYAIGGSANPTINSQGNRFLAPNDRSKKEVTKHENAPESEWKRWNWRSEGDLMLNG
AFFRQTGASGASSTFSRASSLSARPSSLVGTMTMTAGALKCRRGSHC
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgggatcgtcaacattttcatatatctttcacattctcttcatttccctccttgttcca
aatctagcttcttcctcgccagttcaagatcctgaatttgttgttgatgaagttcacaag
agtatcaatgcttcgaggaggaacttgggttacttgtcatgtggaacaggaaatcccatt
gatgattgttggaggtgtgatccgaactgggagaagaaccggcaaaggttagccgattgc
gcgattgggttcgggaagcatgccatgggaggcaaaaatggtcgaatctatgttattacg
gatgccggcgatgacgacccggtgaaccctaggccgggtactttaaggcatgctgtgatt
caagacgagccattgtggattattttcaagagagatatggtgattacgttgaaacaagaa
ttgttgatgaactctttcaagacaatagacggtcgaggtgcgagcgttcacatatcgggt
ggaccatgcatcaccatccattatgtgtcgaacatcataatccatggcatccacatacat
gattgtaaacccgggggtagtacaattataagagactctccccatcatgcagggcattgg
actccatcggacggtgatggtgtctcaatctttggcagcaagaatatatgggttgaccat
tgttcattgtcgaattgtcatgatggactcatcgatgtcatccatggatccaccgccgtg
actatatcaaacaactacatgacccatcatgataaagtcatgcttttgggccacagtgat
tcctatatgcaagataaaaacatgcaagtcactgttgcctttaaccatttcggggaaggt
ctaattcaaagaatgccaaggtgtagacttggatatttccatgtggtgaacaacgattac
acccattgggaaatgtacgccattggtggcagtgcaaaccctactatcaacagccaagga
aacaggtttctagcacccaatgatagatcaaagaaagaggtgaccaagcatgagaatgca
ccagagagtgaatggaaacgctggaactggagatccgaaggagacttgatgttgaatgga
gcctttttcaggcaaaccggtgcttctggtgcatcttcaaccttttctagggcttcgagc
cttagtgctagaccatcttctcttgtgggtacaatgacaatgactgctggcgcactcaaa
tgtagaaggggttcccactgctag
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