Gossypium hirsutum (upland cotton): 107892262
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Entry
107892262 CDS
T04793
Name
(RefSeq) zinc finger CCCH domain-containing protein 41
KO
K13192
RNA-binding protein 26
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ghi01009
]
107892262
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107892262
03041 Spliceosome [BR:
ghi03041
]
107892262
Protein phosphatases and associated proteins [BR:
ghi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
107892262
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
107892262
Spliceosome [BR:
ghi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
107892262
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_Nup35
PHM7_cyt
zf_CCCH_4
CCDC113_CCDC96_CC
zf-CCCH
TGF_beta_GS
RNase_Y_N
Motif
Other DBs
NCBI-GeneID:
107892262
NCBI-ProteinID:
XP_016672781
UniProt:
A0A1U8I3H6
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All DBs
Position
D09:complement(9078924..9084801)
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AA seq
938 aa
AA seq
DB search
MELKVSSPKPGGTSAPDCISDPEEKEVSDEEDDDRNHKHRRRDTCSQSLERDSTDPVFTR
PYRKRSKPLENGHNESQAGETCKNSNSLLLEKDLTSKFDRRYPGLASLPRGHLDLNQRIR
SNQTFSGDSGPGRGRGRDNSSWNHRDSRFNSVDIAYQLVQPGSVAPSLFAGRGLPNLSNT
QAPSWSAFGLMPGIPNGSLDTLHSIGLQGVLRPPMNSSLNMGIPRQRCRDFEERGFCLRG
DMCPMEHGVNRIVVEDVQSLSQFNLPVSVPSAQILATSAGPGPLPSVLPPSITLVNGKGI
HSKSSKSGMTEDATGLNCAYTATTSAGGDLYDPDQPLWNNNGPEVSAALTGQCSPKINET
EPLRNDDISDLHHGMLCESADNELPIRSSRSQGMNLSVWGRIGSSRSRIEAKDKIDHLPS
DHLENETKKEKEPFPSSQDTSCQVKRISSEDDGSKVMDSSLKSQIDLHSRRKPTQKALRT
LFVNGIPQKCNKREALLSHFRKFGEVIDIYIPQNSERAFIQFSRREEAEAALKAPDAVMG
NRFIKLWWANRDSITDDGVNSGSGSGMPVTPSGLTASGVPPQPVANKGKDNLQLIAQKSN
VVQDTDVPSLKSPKSVSTNGPQAPPLLQKKLETLERMKEELRKKQEMLEQKRNDFRRQLN
KLEKQSSIVQDDPLSEPAAKRHKVGSAADPAKALIPSSSEPSASTAKTCTKEMTDKNKSM
ENVVSRSPKSSTTMALQESMGSKQQYCKPRQSAPMRHPFLMNKYRLDNRPTAFRVIPPLP
SGFADVDVLKEHFLQYGDLFSVELQDVENEDNGDIGSEALKKCSALITYSTHQSAERAYV
NGKCWQGNNLQFKWLIYNTNPSGKETSSSAPKEPLEADVTKEEKTAHSVAQEVIGSGNGE
SENSDRESFVEHMELAEVSEQSPSPTSSMKESPKGDMS
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atggagctgaaagtctcatcgcctaagcccggtggtacttctgctcctgattgcataagt
gatccggaggagaaagaagtcagtgatgaggaagatgatgatcgcaaccataagcatcgt
aggcgggatacatgttctcaatcattagagagagattctacagatcctgtatttacaagg
ccatacagaaagcgcagtaaacctttagaaaatgggcataatgaatctcaagcaggtgaa
acctgcaaaaattctaacagtttgcttctagaaaaagacttgacatctaagtttgacaga
agataccctggattagcatcacttcctcgaggacatttggatctgaaccagagaattagg
tcaaaccaaacattcagtggagattctggtcctggtcggggaagaggaagggataactct
tcttggaatcaccgtgattcaaggttcaactctgttgatattgcttatcaattggttcag
ccaggatctgttgctccaagtctctttgccggaaggggattgcctaatctttcaaacaca
caagccccatcatggagtgcctttggccttatgccaggaataccaaatggcagccttgat
acactccactctattggtttacaaggggtgcttaggccaccaatgaattcttcattaaat
atgggcattcctcgccaacgctgtagagactttgaggagcggggattttgtctaagagga
gacatgtgtccaatggagcatggtgtcaatcgtatcgttgttgaagatgttcagagtctg
tcacagtttaaccttcctgtttcagttccaagtgcacaaatattggcaacatcagctgga
cctgggccgctaccttctgttcttcctccttcaatcacattggtgaacggcaagggtata
catagcaaaagtagcaagtctggaatgactgaggatgctacaggtttgaattgtgcatat
actgctactactagtgcaggtggtgatttgtatgatcctgatcaacccttgtggaataac
aacggcccagaagtatcggcagcactcacaggacagtgttcgcccaagattaatgaaacg
gaaccattgcgaaatgatgatatctctgatcttcatcatggcatgttatgtgagagtgct
gataatgaattgccaattagaagcagcaggtcacagggcatgaatttatcagtttggggt
agaattggtagctccagaagtagaatagaagcaaaagataaaattgatcatttaccctca
gaccatcttgagaatgaaaccaagaaggaaaaagaaccatttcctagctcacaagacact
tcctgtcaagttaagcggatcagcagtgaggacgatggctccaaagttatggattcgtca
ttgaagtcacagattgatttgcatagtcgcagaaaacctactcaaaaggcactccgtaca
ctgtttgtcaatgggattccccagaaatgtaacaaaagagaggctcttctgtctcatttt
cgcaagttcggagaggttattgacatttatattccacaaaatagtgaacgggcattcatc
caattttcaaggagggaagaggcagaagctgctcttaaggcacctgatgccgtaatgggt
aaccgctttattaagctctggtgggctaatagggatagcataactgatgatggcgtgaac
agtggcagtggcagtggcatgccagtaactccaagtggtctaacagcttctggtgttcca
cctcaacctgttgctaataaaggaaaggataatcttcaacttattgctcagaagagtaat
gttgtccaagacactgatgtgccttctttgaaatcccctaaatctgttagtacgaatggt
ccccaggctccacctctgttgcagaaaaagttagagactctggagcgaatgaaagaggaa
ctacgcaagaagcaggaaatgctggagcagaagcggaatgacttccggcgccagttgaac
aaacttgagaaacaatcaagtattgtccaggatgatccactgtctgagccagcggctaag
aggcacaaggttggaagtgcagctgatcctgcaaaagctttgattcctagttcctctgaa
cccagtgcttctacagcaaaaacatgcactaaagagatgacagataaaaacaaatcaatg
gaaaatgttgtttctcgaagtccaaaatcaagtaccaccatggcattgcaggaatctatg
ggctcaaagcagcagtactgtaagcctcgtcagtctgcacccatgaggcatccattcctg
atgaataaatacagattggacaaccgacctactgcttttagagttattccgccgttgcct
tctggttttgcagatgttgatgttttgaaggagcacttcttacaatatggagatcttttc
tctgtggagctacaagatgtggaaaatgaagataatggtgatattggatctgaggcattg
aagaaatgctcagctcttataacatacagcacacaccaatcggcagaaagggcttatgta
aatggtaaatgctggcaaggcaacaatttgcagtttaaatggttgatatataacactaac
cctagtggcaaagaaacttcatcttccgcaccaaaggagcctttagaagccgatgtcaca
aaagaagagaaaacagcacacagcgttgcccaagaagtcattggttcaggcaatggggag
tccgagaattcggatagagagagtttcgttgagcatatggaattggctgaagtttcagag
cagagtccatccccaacatctagcatgaaagagtcaccaaaaggcgacatgagttga
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