Gossypium hirsutum (upland cotton): 107892383
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Entry
107892383 CDS
T04793
Name
(RefSeq) sister chromatid cohesion protein SCC2 isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ghi03036
]
107892383
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
107892383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
PHD
Cnd1
PHD_2
zf-PHD-like
Porphobil_deam
Motif
Other DBs
NCBI-GeneID:
107892383
NCBI-ProteinID:
XP_016672946
UniProt:
A0A1U8I3Z3
LinkDB
All DBs
Position
D09:2507267..2519128
Genome browser
AA seq
1824 aa
AA seq
DB search
MSNPSSSSWVSDQPGQRLMDMAHCGIGLTNTIHSEVAQCLPLPSLPVFCGASDLELRLFD
DSAVGASRSLNRPQIIAQASRIADLLRETDVSYLNLRDEADSVSHDHLEPLELHAQVLQY
NPAAFEYVTPGLVKGKNSGGAVFERKPSESSAPLIGQFQRETRGNRNQQTDVVANDMPKS
SSKKPKIKKKADDTGSSVLPDPSELQDAIIGNFRELLEDFCSRAQIPTDDRDEMEWLSLP
VNDVRMLVNEIMSVRAKRLLHLVPVDILVKLLRVLDHQIHRAEGLSIDECEHQDSDVFSL
VFCALESIHASLAIMAHNDMPKQLYHEEIIERILEFSRHQITDVMSAYDPSYRALHKPSE
NGAVEDDDDEEPDAELGSASKKRRSTKTAKAKKSAMNKVSGAVNAILQKLCTILGLLKDL
LLIEKLSDSCVLQLLKTSFTTFLVDNIQLLQLKAIGLLTGIFYSYTQHRTYIIDEMVQLL
WKLPVSKRAVRAYHLPDEEQRQIQMITALLIQLVHSSANLPEALKQTSIGSPILEVSVDA
GYLTKCHESVQDTCCHFWTRVLQRLASVKTQEASELKLMIENLVTDLLTTLNLPEYPAAA
PILEVLCVLLLQNAGLKSKDTSVRAMAIDLLGTIAARLKHDALLNRKDKFWISEELLSVD
DTDRSYPKGACSICFDGKEEKVLYRCQGCQRFFHSDCMGVREQEGPNRSWYCQFCMCKKQ
LLVLQSYCESQYKDDEKPKRGRSESSKSSDPITKVEIVQQMLLNHLQDAASADDAHLFVR
WCYLCLWYKDGPKSQQNFNYYVSRLRSKAIVRDSGTVSSLFLRDSVKKIALSLGQNNSFS
RGFDKILYLLLVSLRESSPVIRAKALRAVSIIVEVDPEVLGDKRVQVAVEGRFCDSAISV
REAALELVGRHIASHPDVSLKYFEKVAERIKDTGVSVRKRAIKIIRDMCNADPNFSGFTN
ACIEIISRVSDDESSIQDLVCKTFYEFWFEEPSGMQTQYPGDGSSIPLEVAKKTEQIVET
LRQLPNHQFLVTVIKRNLVLDFFPQSAKAAGINPVSLAAVRRRCEVMCKCLLERILQTEE
TSNVEAEVPTLPYVLALHAFCVVDPSLCMPASDPSQFVITLQPYLKSQVDNRVGAQLLES
IIFVIDAVVPLMRKLPPSVGDELKQDLKHMIVRHSFLTVVHACIKCLCSVSRKAGNTGDV
VEYLIQLFFKLLDSRATDNKQQVGRSLFCLGLLIRYGNSLFGGSSSKNIDVASSISLFKK
YLEMDDFSIKVRSLQALGFALIARPEYMLEKDIGKILEAALAASSNVRLKMQMLQNLLEY
LLDAESQMETDKASDDQVQYTVEGGHSVPVAAGAGDTNICGGIVQLYWDNILGRCLDFNE
EVRQSALKIVEVVLRQGLVHPITCVPCLIALETDPLDVNQKLAHHLLMNMNEKYPAFFES
RLGDGLQLSFIFMRSISGNAHENPNEKSQSKLPGNLKAKSDAGSLTQARLGVSRIYKLIR
GNRVARNKFMSSIVRKFDTPIWNDSVIPFLMYCTETLALLPFSSPDEPLYLIYTINRVIQ
VRAGALEANLKTLSSNLLQTDAQMMTSNNGIVQPDYSQAAYNHMATLDLNGTFQEPPVVQ
PPFFHMTSIDLNGTIQQNFSYQSISHYPPTIETTMHKMAPSEPRALSKDEIQKIQADVLA
ATALQLLMKLKRHLKIVYSLNDQRCQAFSPTEPIKPGDVLTRQNVPFDISETQTTLPSTY
QELVQRYQEYKNALREDAIDYSTFTANIKRKRPTPRKGGKAVRTNGGGDEDDDYDEEWTG
GSGVRRMSNSGRKSYNIRSSSRQR
NT seq
5475 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatccaagtagctcgtcctgggtctcggatcaaccggggcagaggttaatggac
atggcccactgcggtatcggcttgaccaacaccatccactccgaggtggcgcagtgcttg
ccgcttccttcgttgcctgttttctgtggtgcttcggatctggagctccggctgtttgac
gattcggctgttggagcttccaggtctttgaaccgacctcaaattatagctcaggctagt
cgaattgctgatctgcttcgcgaaactgacgtttcatatctgaatcttagggatgaggca
gattcagtttcgcatgaccatttggagcccttggaacttcatgcacaagttctccaatac
aaccctgcagcatttgagtatgttacccctggtcttgtcaaggggaaaaactctggtggc
gctgtgtttgaaaggaagccatctgagtcaagtgctcctcttattggtcaattccaaaga
gagactcgcggcaatcgcaatcagcagactgatgttgttgctaatgatatgccaaaatcg
tcttccaagaagccaaaaataaagaaaaaggctgatgacactgggtcatcagttctacca
gatccttcagagcttcaagatgctataattgggaacttccgtgagctgctcgaagacttc
tgcagcagagctcaaattcctactgatgatagggatgagatggagtggttatcattgcca
gttaatgatgttagaatgcttgtaaatgaaattatgtcagtacgtgcaaagagacttcta
catttggttcctgtagatattcttgtgaaattgttacgggttctagatcatcagatacat
cgggcagaaggcttgtctattgatgaatgtgaacatcaagactcagatgtattctcatta
gtattctgtgccctggagtccattcatgcttctttggcaataatggcacataatgacatg
ccaaagcaattataccatgaagagattattgaaaggattttagaattctctaggcaccag
ataacagatgttatgtcagcttatgacccatcatatcgtgccttgcataaaccaagtgaa
aatggagcagttgaagatgatgatgatgaggagcctgatgctgaactggggtctgctagc
aagaaaagacgcagtaccaagactgctaaagcaaagaaatcagcgatgaataaggtctct
ggtgctgtgaatgctatactacaaaagctctgtactattcttggtttactcaaagacttg
ttattgattgagaagttatctgatagttgtgttctacaactattaaagacaagctttact
acttttttggtggacaacattcagctcttgcaactcaaagcaattggcttgctaactggg
atattctactcatatacccaacatagaacatatataatagatgaaatggttcagcttctc
tggaagttgcctgtttcaaagcgagcagtaagagcgtatcacctacctgatgaagaacag
aggcagatccagatgattacagctttgctgattcagttggttcatagcagtgctaacctt
cctgaagctttaaagcaaacatcaattggaagtcccatcttggaagtgtcagttgatgct
ggttatttaactaaatgccatgaatccgttcaggatacatgttgtcatttctggactcgt
gtccttcaacgtcttgcttctgtaaagactcaagaggcctctgagttgaaactgatgatt
gagaatcttgtcactgatttactgacaacattaaatctacctgaataccctgctgctgct
cctattttagaggttctttgtgttttactgctccaaaatgcaggtctgaaatctaaggat
acctctgttcgtgcaatggcaattgatcttctaggcacaatagcagcaaggttgaagcat
gatgctctcctcaataggaaggacaagttctggatatcggaagaattgcttagtgtggat
gatactgatcgtagttacccaaaaggtgcatgttctatttgttttgatggaaaggaagag
aaagtgttatataggtgtcaaggttgtcaaagatttttccacagtgattgtatgggggta
agagaacaagaaggtcctaaccgtagttggtactgccagttttgcatgtgtaagaagcag
cttcttgtattgcaatcatactgtgaatcgcagtacaaggatgatgagaaaccgaaacgt
ggtcgctcagaaagttctaaatcttctgatccaattacgaaagttgaaattgttcagcag
atgcttttgaatcatcttcaagatgctgcttctgctgatgatgcccatctttttgttcga
tggtgttatctttgcttatggtataaagacggcccaaaatctcaacaaaatttcaattac
tatgtttctagactgagatcaaaagcaatagtgcgtgattcggggactgtttcttcactg
tttttaagggattcagtcaagaaaattgctttatcactgggacaaaataattctttctct
agaggatttgacaagattctttacttgcttctggttagcttaagagaaagctcccctgtt
attagggccaaggctttacgagcagttagtattattgtagaagttgatccagaggtatta
ggtgacaaacgtgttcaagtggctgttgagggaaggttttgtgactctgcaatatctgtc
agggaagctgcattggaactagttggcaggcacattgcttcacatccagatgttagttta
aagtactttgagaaggtagcagagaggattaaagatactggagtcagtgtacggaaacga
gcaatcaaaattattcgagatatgtgcaatgcggatcctaacttctcagggtttacaaat
gcttgcattgagattatttctcgtgttagtgacgatgaatcaagtattcaggatcttgtt
tgtaagacattttatgagttctggtttgaagaaccttctggaatgcagactcagtatcct
ggagatggtagttccattccgttggaggtggctaagaagactgagcagattgttgaaaca
ctgaggcagttgcctaatcatcagtttcttgtaactgtcattaaacgtaacttggtcctt
gattttttccctcaatcagcgaaagctgctggaatcaaccctgtctcccttgctgcggta
cgcaggcgatgtgaagtgatgtgcaagtgcttattggaaagaatattgcagacagaagaa
acaagtaatgtggaagcagaagttcctacactcccctatgtgttggccttgcacgcattt
tgtgttgtggacccatcactttgcatgccagcttcagatccttcccaatttgttatcaca
ctacagccttaccttaagagtcaggttgataacagagttggtgcacagttactggagagt
ataatctttgtaattgatgccgttgtgccgttgatgcgaaagttgcctcctagtgttggt
gatgaactaaaacaagatctgaagcacatgatcgtccggcattcttttttgactgttgtc
cacgcttgcatcaagtgtctttgttcagtgagtagaaaggcagggaatactggcgatgtt
gttgagtatctcattcagttatttttcaaattattggattcccgggcaactgataacaag
cagcaagtgggccgctctctcttctgtcttggattgcttatccgctacggaaactctttg
tttggtggttctagtagcaaaaatatcgatgttgctagcagtattagtttgtttaaaaag
taccttgaaatggatgattttagcataaaggttagatctttgcaggcattaggttttgct
ctaattgctaggcctgaatatatgttggaaaaggacattggaaagattttagaggcagca
ttagcagcgagttctaatgttcgtcttaagatgcaaatgttacaaaatttgttggaatat
cttcttgatgcggaaagtcaaatggaaacggataaagcgagtgatgatcaagttcagtat
actgtagaaggtggccacagtgtacctgtagccgcgggtgctggtgatactaacatttgt
gggggtatagtccagctgtactgggataatattctggggagatgcctggactttaacgaa
gaagttcgccaatctgccctaaagatagtggaagtagttcttcgacaaggccttgttcat
cctattacttgtgtcccatgccttatagccctagaaacggatcctctggacgtcaaccaa
aagttggctcatcatttgctaatgaatatgaatgagaaatatcctgcttttttcgagagc
cgactgggggatgggcttcagctgtcatttatcttcatgcgctcaattagtggcaatgca
catgaaaatcctaatgaaaaatcccaatcaaagcttcctggaaatttgaaagcgaaatct
gatgctgggtctttaacacaagcaaggctgggagtttctagaatttacaagctcattcgt
ggaaatcgggttgccaggaacaaattcatgtcctcaattgtgcgcaaatttgatactcct
atctggaatgattccgttatacctttcttgatgtattgtacggaaactcttgctttgtta
ccattttcatctcctgatgaaccactttatttgatctacaccataaatcgagtgatacaa
gtcagagcaggggctcttgaggcaaatttgaaaaccttgagttcaaatttactgcaaaca
gatgctcagatgatgactagtaataacgggatagttcagccggattatagtcaagctgct
tataatcatatggctacgcttgatttgaacggaacatttcaggagccgcctgtggttcag
cctcctttctttcacatgacatcaatcgatttgaatggtacaatccaacaaaacttcagt
tatcagtctatttcacattatcctcctacaatcgagacaacaatgcataagatggcccct
tctgaacctcgtgctctttccaaagatgaaattcaaaaaatccaggctgacgttcttgcc
gctactgcattacagcttcttatgaagctaaaaagacatctaaaaattgtttatagcctg
aacgatcaaagatgccaggccttttctccaactgaacccataaaaccgggggatgttcta
acgaggcagaacgttccctttgacatcagtgaaacacagacaaccttgcctagcacctat
caagaattggtgcagagatatcaggaatacaaaaatgcgttgagggaagatgcaatcgat
tactcaacattcacagccaatatcaaaaggaagcgaccaactccgaggaaaggaggaaaa
gcggtgcgaacgaacggtggtggggatgaagacgatgattacgatgaagagtggacaggt
gggagtggtgttcgtcggatgagtaacagcggacggaaaagttacaacataagaagcagc
agtcggcagcgatag
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integrated database retrieval system
