Gossypium hirsutum (upland cotton): 107892395
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Entry
107892395 CDS
T04793
Name
(RefSeq) transcription initiation factor TFIID subunit 4b
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107892395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107892395
03036 Chromosome and associated proteins [BR:
ghi03036
]
107892395
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
107892395
Coactivators
SAGA/TFTC/STAGA complex
107892395
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
107892395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
RST
SPMIP10-like
Motif
Other DBs
NCBI-GeneID:
107892395
NCBI-ProteinID:
XP_040959428
UniProt:
A0ABM3AXB4
LinkDB
All DBs
Position
A01:complement(27155912..>27160486)
Genome browser
AA seq
904 aa
AA seq
DB search
MHPLLSHLIQIXFLSQGSNRVSSQSLAQWPTVGQDGNANFQHQQPVQSAQQRSSEMEQKQ
QGLLVMGSLQQPNDVPQGVNCLPPQQKQPQDDHQQGVAEQVSAQVPLMAGIQTTERSPIP
REPERTNIQDSESQYAKLQKMSNQQAGGTEQPNNQVNRGKQVPFAVLLPSLLPQLDKDRA
MQLHTLYGKLKKNEIAKDGFVRHMRDIVGDQMLRLAVNKLQVQMSSNQVPLQSQVAARPN
TPRMPSVGGATQFGGPHTLAQLHQKGPNSPANSSHPSPPAVLMQTNSSYLSIENKVQKSQ
EMDRQPDSHFGVLKSQNPSSSSTTVNQERDRASIPVQGINMQQQHLNFAQTSFGMYGSSN
YHTYSGSNVSNSGSCLKPQPHESQIRQIPHHQSMGSNPVGGPTQTMNMMGGPKLERQNST
NDPNRLQGGSISHFSSNSVSWQASSSKELNPGPLSSMTYVKQESVDQVPEQQHGLFLSAT
HGASTAIVKEGNAVNATPKDEFLEKQSSRVGFSTPTSMAPPNLLSPSITTQMDSNLPLGS
QSPSVPATAGVNGKAPQKKPCAGQKKPLEALGSSPPLSSKKQKVSGGFSDQSIEQLNDVT
AVSGVNLREEEEQLFSGPKDESRVSEASRRIVQEEEERVILQKIPLQKKLAEIMAKSGLK
NISNDVERCMSLCVEERMHGLLCNLIRLSKQRVDVEKPRHRTHVTSDVQQHIMMMNRNAR
EEWEKKQAEAEKLRKLNDPEAETTVDGDKEKDDGRVKVVKANKEEDDKMRATAANVAARA
AVGGDDMLSKWQLMAEQARQKREGGTDSLSGCQAGKDVNCRPLSASGKNSRDYQESENRG
PLSPPASGSSRKSGRNQGVSTRTRVARSISVKDVIAVLEREPQMSKSTLIYRLYEKTRSE
AAAE
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgcatccacttctcagccacctgattcagatacmgtttttgtctcaaggaagcaatcga
gtttctagtcagtcacttgcacaatggccaaccgtggggcaagacggaaacgctaacttt
caacaccaacaacctgttcaaagtgcacagcagcgatcatccgaaatggagcaaaagcaa
cagggacttcttgttatggggagtctacaacagccaaatgatgttccgcaaggagttaat
tgtctaccaccacaacaaaagcaaccccaggacgatcatcaacaaggagtagctgaacag
gtttctgctcaggttcctctaatggctgggattcagactactgaacgaagtccaatccca
cgtgaaccggagagaaccaatattcaagacagtgaatcacaatatgcaaaattacagaag
atgagtaatcaacaggctggtggcacagagcagccaaataatcaagtaaatcgaggaaaa
caagttccatttgctgtgctgttgccgtccttactgccccaactcgataaagacagagcg
atgcagcttcacaccctttacggtaaactaaagaaaaacgaaattgcaaaagatggattt
gtcaggcacatgagagatattgtaggagaccagatgttgaggttggccgttaataagtta
caagttcagatgagttccaaccaagtcccactacagtcccaggttgcagcaaggcctaat
actccacgaatgccatcagttggtggtgccacacagtttggtggtccacatacattggct
cagctgcaccaaaagggccctaattctcctgccaattcatctcatccctctcctccagcg
gtcctcatgcagactaattcaagttatttatccattgaaaacaaggttcagaagtctcaa
gagatggatcgtcaaccggattctcactttggagtgctaaaaagtcaaaatccttcgtcc
agttcaaccactgtgaatcaagaaagagatcgtgcttcaattcccgtacaaggaattaac
atgcagcagcaacatctgaatttcgcacaaacttcttttggtatgtacgggagtagtaat
tatcacacatactctggatcaaatgttagtaattcaggttcttgtctaaagccgcaacct
catgagtcacaaattagacaaattccacatcatcaaagcatgggatcgaaccctgtagga
ggaccaactcagacaatgaacatgatgggtgggcctaagcttgagaggcaaaactcaact
aatgacccaaatagattgcagggtggatctatatcacacttttcaagcaattctgtttcc
tggcaagcctcatcaagtaaggagctgaatcctggccctttgtcatctatgacatatgtg
aaacaggaatctgttgatcaagttccagagcagcagcatggactttttttgtctgcaacc
catggagcatctactgctatagttaaagagggtaatgcagttaacgctactcccaaggat
gagtttttagagaagcaatcttctagagttggcttctcaacacctactagtatggcacct
cctaacttgctgtctccttccatcacaacacaaatggattccaatctcccgctgggttct
cagagtccatctgtgcctgccacggctggggtcaatggaaaagcacctcaaaaaaagccc
tgtgctggccagaaaaagccgcttgaagctcttggttcttcaccaccattgtcaagtaag
aagcaaaaggtatctggaggcttttcagatcagagcattgaacaactgaatgatgtaact
gctgtcagtggagtgaatctcagggaagaggaggagcaactattttccggccccaaggat
gagagtcgagtttcagaagcatcgagaaggattgttcaagaggaagaagaaagagttatt
ttgcagaaaatccctttgcagaagaaactggctgaaattatggctaaaagtggtttgaag
aatataagcaatgatgttgaacgatgcatgtccctgtgtgtggaggaaagaatgcatggg
ctcctatgcaatttaatcagactatcaaaacagcgggttgatgttgagaagcctaggcac
cggacacacgtcacctcagatgttcaacagcatattatgatgatgaatcggaatgctagg
gaagaatgggagaaaaaacaagctgaggcagagaagctgcggaaacttaatgatcctgag
gctgagactacagttgatggtgacaaggagaaagatgacggtcgagtaaaagtagtaaag
gcaaacaaggaggaggatgacaagatgagggccactgctgcaaatgttgctgcacgggct
gctgttggaggggatgacatgctgtcaaaatggcaacttatggccgaacaagctcgccag
aaacgcgagggtggaacagattcgctatctggttgtcaagcaggtaaagatgtgaactgc
aggcctctatctgcatctggaaaaaattcaagggactatcaagaatcggagaacaggggc
ccactcagtcctcctgcatctgggtcaagtaggaaatctgggcgcaaccaaggtgtctca
acccgtactagagtggctcgtagtatttctgttaaggacgtgattgcagttctggaaaga
gaaccccaaatgtctaagtctacacttatctatcgcctgtatgaaaaaacccgttccgag
gcagcagctgagtga
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