Gossypium hirsutum (upland cotton): 107893027
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Entry
107893027 CDS
T04793
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107893027
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107893027
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
HSD_C
Motif
Other DBs
NCBI-GeneID:
107893027
NCBI-ProteinID:
XP_016673505
UniProt:
A0A1U8I5I8
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Position
D09:6717998..6720251
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AA seq
454 aa
AA seq
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MEVTKLRLVFFFSFAFIIPRLLANIIEIDDFWKQREQEAWNITLAAYESSPENIINHLNY
NVDKVIRKISANQTIEFEDDLTNNTRRYLRGKHKKYTGPCMATNPIDSCWRCKKNWAKNR
KILAKCVLGFGHKTSGGSNGDYYLVTDNSDDDVLNPKPGTLRHAVIQKRPLWIIFARTMH
IKLSQELIVQSNKTIDGRGADVHIAYGCGITLQFVHNVIIHNIHIHHIFPSSGGLIRDSE
DHFGFRTVGDGDGISIFGSSNIWLDHISMSEGQDGLIDAIQGSTAITISNCHFTHHNDVM
LFGASDAYSKDQFMQVTIAFNHFGKELIQRMPRCRWGFFHVVNNDYTHWKMYAIGGSMHP
TIISQGNRFIAPHDLNAKEVTHRIYASESEWKNWVWRSEEDLLMNGAIFRTSGPLSPPDL
KFNEKDIIKAKPGTYVKTLTRFAGTLKCKKRIKC
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggaggtaactaagctgaggcttgttttcttcttttcttttgccttcataattccaaga
ctattggcaaatattattgaaattgatgacttttggaagcaacgtgagcaagaagcatgg
aatattactctggcagcttatgagtcgagcccagaaaacatcatcaatcacctcaactat
aatgttgataaggttattagaaaaattagtgccaaccaaaccatagaatttgaggatgat
cttactaacaacacaagaagatacttgagaggaaaacataagaagtacactggcccgtgc
atggcaaccaatccaattgatagttgttggcggtgtaagaaaaattgggctaaaaaccgt
aaaatattggcaaaatgtgttcttggttttggccacaaaactagtggtggaagtaatggg
gattactacttggtgacggataattctgatgatgatgttctaaacccaaaaccaggaacc
ttacgtcatgctgtgatccaaaaaaggccattgtggattatctttgctcgtactatgcac
atcaaattgtctcaagagctaatagttcaaagtaataagacaattgatggtcgtggagca
gatgttcatatagcatatggatgtggaattacacttcaatttgtgcacaatgtcatcatt
cacaacattcatatccatcacatttttccaagttctggtggcctaatcagggactctgaa
gatcacttcggttttcgaacggtaggtgatggagatgggatttccatctttgggtcatca
aatatttggcttgatcatatttctatgtccgagggccaagatggacttattgatgcaatt
cagggttccactgccatcaccatctcaaactgccatttcacccatcacaatgatgtgatg
ttgtttggtgcaagtgacgcctattctaaagatcaattcatgcaagtcacaatagcattc
aaccattttggcaaggaattaatacaaagaatgcctagatgtcggtggggtttctttcat
gttgttaacaatgactacactcattggaaaatgtatgctattggtggtagcatgcatccc
accatcatcagccaaggcaacagattcattgctccacatgacctcaatgccaaagaggta
acccataggatctatgcatcagagtcagaatggaaaaattgggtatggagatcagaagaa
gatttgcttatgaatggagccatcttcagaacttctgggccactctcacctcccgatcta
aaattcaacgagaaagatataatcaaagctaagcctggaacatatgtcaaaacactcact
cgttttgcaggaactcttaagtgcaagaaaaggatcaagtgctag
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