Gossypium hirsutum (upland cotton): 107893121
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Entry
107893121 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: TATA-binding protein-associated factor BTAF1
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107893121
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
107893121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_2
RIX1
CLASP_N
Motif
Other DBs
NCBI-GeneID:
107893121
NCBI-ProteinID:
XP_016673531
UniProt:
A0A1U8I5P5
LinkDB
All DBs
Position
A13:complement(101382554..101405609)
Genome browser
AA seq
2054 aa
AA seq
DB search
MAQQQSSRLNRLLTLLDTGSTQATRFTAARQIGDIAKSHPQDLSSLLKKVSSYLHSKNWE
TRVAAAHAIGAIAQNVKHTSLADLFSSVGAKMTGAGVSANVKDVVVSPELHSKIVSGVSF
RSFDINKVLEFGALLASGGQEYDIANDNLKNPKERLARQKQNLKRRLGLDMCEQFMDVGD
MIRDEDLVVHKYHQGNGLDNRFYTPPSVNNIQQFVSRMVPNVISKRRPSARELNMLKRKA
KINSKDQAKGWSDDGDTELSPAHNVSTPRGACPDPLGSSKFDAVTDEDSSDHDGDGRWPF
RSFVEQLILDMFDPVWEIRHGSVMALREILTHHGGSAGVYLPDLNSDDALFLEVKDIEYP
SKIKREREIDLNMQVSPDELEPNLKKPKIEDEPFLVLDKVPSADQHGGFDVAIKIEDSAW
TFPSGQFNGQHDISSMKMETEFYDNDVMYQSKEAVVVEEPKSYYEDKGAFANSDVLKDLP
ENCELINLVKLARHSWLKNCEFLQDCAVRFLCVLSLDRFGDYVSDQVVAPVRETCAQALG
ATFKYMHPSLVHETLNVLLQMQRRPEWEIRHGSLLGIKYLVAVRQEMLQDLLGYVLPACK
AGLEDPDDDVRAVAADALIPAADAIVALKGQSLHSIVMLLWDILLDLDDLSPSTSSVMNL
LAEIYSQEDMMPKMFGTSTAKEKQNFDLNEVVDVDEVGEAKDLQENPYMLSMLAPRLWPF
MRHSITSVRHSAILTLERLLEAGYKRSISEPSGSSFWPSFILGDTLRIVFQNLLLESNEE
ILQCSERVWRLLVQCPVGDLEVAAASFMSSWIELATTSYGSTLDATKMFWPVALPRKSHH
KAAAXMKAVKLENESYGTTGLDSVRGAVSQENNGDTSSNLVKIIVGADAEMSVTNTRVIT
ASALGIFASKLQANSLQYVVDPLWNALTSLSGVQRQVASVVLISWFKEIKSRDSSGNQEI
IHSFPDHLRKWLLDLLACSDPAFPTKDSVLPYAELSRTFAKMRNEASQLLHAVESSGMFV
DILSTMKVNVESVTVDEAISFASKLSLLSSDNAENESMKRNIDDIESAKQRLIATSGYLK
CVQSNLHVTVTSLVAAAVVWMSELPARLNPIILPLMASIKREQEEILQQKAAEALAELIY
HCIARKPSPNDKLIKNICSLTCSDPSETPQAAVINSMEIIDDQDFLSFGTSTGKPKSKVH
MLAGAEDRSKVEGFISRRGSELALRHLCEKFGPTLFEKLPKVWDCITEVLLPSSPSEDHQ
IVQAVESVKDPQILINNIQVVRSIAPVLDESLKPKLLMLLPCIFKCISHSHVAVRLAASR
CIMTMAKSMTVNVMRAVIENAIPMLGDVTSVHARQGAGMLITLLVQGLSVELVPYAPLLV
VPLLRCMSDCDHSVRQSVTRSFAALVPLLPLARGLPPPVGLSEGLSRNTEDAKFLEQLLD
NSHIDDYKLFTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASEI
AEYRASNKDVDPPPSLIVCPSTLVGHWAFEIEKYIDASLISTLQYVGSVQDRVALREQFD
KHNVVITSYDVVRKDAECLAQFPWNYCILDEGHIIKSAKSKITLAVKQLKAQHRLILSGT
PIQNNIMDLWSLFDFLMPGFLGTERQFQATYGKPLLAARDPKCSAKDAEAGALAMEALHK
QVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPAQLLLYEQFSGSHVKQEISSMVKTDESG
VAGGAKQTSPKASTHVFQALQYLLKLCSHPLLVVGDKVPESLTSQLSDLFPANSDVISEL
RKLHHSPKLVALQEILEECGIGVDTSASDGAVTVGQHRVLIFAQHKALLDIIEKDLFHTH
MKNVTYLRLDGSVEPEKRFDIVKAFNSDPTIDALLLTTHVGGLGLNLTSADTLIFMEHDW
NPMRDHQAMDRAHRLGQRKVVNVHRLIMRGTLEEKVMSLQRFKLSVANAVINAENASLKT
MNTDQLLDLFASAETSKKGATASKRSDSGIDGDPKLMGTGKGLKAILGGLEELWDQSQYT
EEYNLSQFLAKLNS
NT seq
6165 nt
NT seq
+upstream
nt +downstream
nt
atggctcagcaacaatcctcgcgtctcaatcgtttactcactctgttggacactggttca
acgcaagcgacgagattcactgcagcgcggcagattggtgatatcgccaaatcgcatccg
caggatttgagttctcttctcaagaaggtttcttcgtatcttcacagtaaaaattgggaa
acgagggttgctgctgctcatgccataggggctattgctcaaaatgttaagcacacttct
ctggctgatttattctcttctgttggagcaaagatgactggggctggggtatctgctaat
gtcaaagatgtggtggtatcacctgagttacattctaaaattgtatcaggtgtttcattt
agaagctttgacatcaacaaggtgttggagtttggtgcgttgttggcctcaggtggacag
gagtatgatattgcgaatgataacttaaagaatcctaaagagagattggctcgccaaaaa
cagaacctaaaaagacgtctaggtttggatatgtgtgagcagttcatggatgtcggtgat
atgattagagatgaggaccttgtagttcacaaataccaccaaggaaatgggttagataat
agattttacacgccaccatctgtaaataacatccagcaatttgtttcacgtatggtacct
aatgttatttctaaaagaaggccaagtgctagggagttgaatatgttaaagcgaaaagct
aaaataaattcgaaagatcaagcaaaaggctggtctgatgatggagatacagagttatca
cctgctcataatgtatcaactccaagaggagcatgtcctgatccattaggttcgagtaag
tttgatgctgttactgatgaagacagctctgatcatgatggggacggccgttggcctttc
cgtagttttgtcgaacaactcattcttgatatgtttgatcctgtttgggagattcgccat
ggtagtgttatggctttgagagaaattttaacacatcatggtggttctgccggagtatat
ttgcctgacttgaactcagatgatgcgctgtttcttgaagtaaaagatatagaatatcca
agtaaaattaagagagagagagaaattgatttgaatatgcaagtttcaccagatgaattg
gagccaaatctgaagaagccaaagattgaagatgaaccatttctggtgttggacaaagtc
ccctctgcagaccagcatggtggctttgatgttgcaattaagattgaggatagtgcgtgg
acctttccctcagggcagtttaacggtcaacatgatattagttctatgaagatggagact
gaattttatgacaatgatgtgatgtaccagtctaaagaagccgttgtagtggaagagcca
aaaagttactatgaagataagggtgcatttgcaaattcagatgtgttaaaagatctacct
gaaaattgcgaacttatcaacttagttaagctagccaggcattcctggcttaagaattgt
gaatttcttcaggactgtgcagttcgcttcttgtgtgtgctatcactagaccgtttcgga
gactacgtatctgatcaggttgttgctccagtacgagaaacttgtgcacaagcattaggt
gctacttttaagtacatgcacccttcattagttcatgaaacattgaatgtcttgttgcaa
atgcagcgtaggccagaatgggaaattcgtcatggaagccttttgggtattaagtacttg
gttgctgttcgacaggagatgctgcaagatttgcttggctatgttcttcctgcttgtaaa
gctggattggaggaccctgatgatgatgtacgagctgtggctgcagatgctttgatacct
gctgcagatgctattgttgccttaaaaggtcaatcactgcattcaattgttatgctgctt
tgggatatactacttgatttggatgaccttagtccatccactagcagtgttatgaatctg
ttggctgaaatatactcccaagaagatatgatgcccaagatgtttgggacatcaacagct
aaagagaagcagaattttgatctaaatgaagtagttgatgttgacgaggttggagaagcg
aaagatttgcaggaaaatccatatatgttgtctatgttggcaccacgattatggcccttc
atgaggcacagtattacatcagttcgacactcagcaatccttactttggagagacttctt
gaagctggatataaaaggagcatttctgagccttctggtagttccttttggccatctttt
attctgggtgataccctgaggattgtattccagaacctgctcctagaatccaatgaggaa
attcttcagtgttctgagagggtatggagattgcttgtgcagtgcccagttggggacttg
gaagttgccgcagcatcctttatgtcatcttggattgaacttgcaactacttcttatggt
tcaacattagatgctacaaaaatgttttggccggttgctcttcctcgaaagagtcaccat
aaagcagcagctnaaatgaaagctgtgaagcttgagaatgaatcttatggaactactgga
ttggattctgtgagaggagctgtttctcaggaaaataatggggatacttcttccaactta
gtgaagataattgtcggtgctgatgcagaaatgtctgtgactaatactagagtcattact
gcttcagcattggggatatttgcatccaagttgcaggcaaattctctgcagtatgtagtt
gatccactgtggaatgcacttacctccttgtctggagttcaaagacaggtggcatctgtg
gttcttatttcttggttcaaagagatcaaaagcagggattcatcaggaaaccaggaaatt
atacattcttttccagatcatcttagaaaatggttgttggatttgctagcatgttctgac
cctgcattccctactaaagattcagttctaccttatgctgagctgtcaaggacatttgct
aagatgcgcaatgaagctagtcaattactacatgctgttgaatcatctggcatgtttgtg
gatatattgtcaactatgaaagttaacgttgaaagtgtaactgtggatgaggcgatcagt
tttgcatcaaaattgtcgttattatctagtgataatgctgagaatgaatcaatgaaaagg
aatattgatgatatagagtcagcaaaacaacgccttatagcaacttcaggctatttaaaa
tgtgttcagagtaatttgcatgttacagtgacctctttggttgctgccgctgttgtctgg
atgtcagagcttcctgcacgacttaatcctataattttgcctttaatggcctcaattaaa
agagaacaggaggaaatactgcaacaaaaggcagcagaggcacttgctgaacttatttat
cattgcattgctcgcaagcccagcccaaatgataagttaataaagaatatttgtagtttg
acgtgctcagatccttctgagactcctcaagctgcagttatcaattccatggagattatt
gatgaccaggatttcctctcctttggtactagtacgggaaaaccaaaatcaaaggttcac
atgctagctggtgctgaagatcgatcaaaagtggaaggttttattagcagaagagggtca
gaactagcattgagacatttatgtgagaagtttggtcctacattgtttgagaagcttccc
aaagtctgggattgcattactgaagttcttttgcctagcagtccttcagaagatcatcaa
attgtgcaggctgttgaatctgtcaaagatcctcagatcttgattaataatatccaggtt
gtacgttctattgctccagtactggatgaatccttaaaacctaaactgcttatgcttctt
ccttgcatatttaaatgcattagtcattcccatgtggcagttagattggccgcgtccagg
tgtattatgactatggccaagtctatgactgtaaatgtaatgcgggctgtgattgagaat
gccattccaatgttgggggatgtgacgtctgtccatgccagacaaggtgccggcatgctt
attactttacttgttcaaggattgagtgtggagctggttccatatgcacctttgttagtt
gtccctcttcttaggtgtatgagtgattgtgatcattctgtcagacagagtgtgacacgc
agttttgctgccctggtgcctcttcttccattagcaagaggccttcctccacctgttgga
ctgagtgaaggtttatctagaaatacagaagatgcaaaatttttggagcaactgcttgat
aattcccatattgatgattacaagctgttcactgaattgaaagtgacactgaggaggtat
caacaagaaggtataaactggttggcctttttaaaacgtttcaagcttcacgggatcttg
tgtgatgatatggggcttggaaagacgcttcaagcatcagcaattgtagcatctgagata
gctgagtatcgtgcttcaaataaggatgtggatcctcccccatccttaattgtttgtcca
tcaacccttgttggacactgggcttttgaaatagaaaaatacattgatgcttctctgata
tccactcttcaatatgttggttctgttcaggatcgtgttgctttgagagaacagtttgat
aagcataatgtagttataacatcatatgatgtggtgcgcaaggatgctgagtgtcttgca
caatttccctggaactactgtattttagatgaaggacatatcatcaaaagcgctaaatct
aaaataacattggcagtaaagcagctgaaagctcagcacaggttaatacttagtgggact
cccatccagaacaatatcatggatctgtggtccctttttgactttctaatgccaggattt
cttggaacagagagacagttccaagccacctacggaaagccactgctggctgctagagat
cctaaatgttctgcaaaggatgctgaagctggggcacttgctatggaagcattgcacaaa
caggtcatgcctttcctacttcgtcgaacaaaagatgaggttttgtcggacttgccagag
aaaatcattcaggacagatactgtgaccttagccctgcccaattattactttatgaacag
ttctctggttctcatgtgaaacaagaaatttcaagcatggtaaagacagatgaatctgga
gttgcaggaggagcaaagcagacttcaccaaaggcatctacacatgtatttcaggcattg
caatacttgctaaaactttgtagccatcccctgcttgtcgttggagacaaggttccagag
tcacttacatcgcagttgtcagatctttttccagcaaattcagatgtcatttctgaactt
cgtaaactccaccactctcccaaattagttgctcttcaggagattctggaagagtgtgga
attggtgtggatacttctgcttctgatggcgctgtcacagttgggcagcacagagttctg
atatttgctcagcataaagctttactggatattattgaaaaggacttgtttcacacccac
atgaagaatgtcacatatctacgactggatggatcagttgaaccagaaaagcgttttgac
attgtgaaagctttcaattctgatccaactatagatgccctgctgcttacaacacacgtt
ggtggtcttggtctgaacttgacttccgctgataccctcattttcatggaacatgattgg
aatccaatgcgtgatcatcaggcaatggacagagcacatagattaggccaacggaaagta
gtgaatgtccaccgtctcatcatgcgtggtaccctggaagaaaaagttatgagcctgcaa
cggttcaaactatcagttgccaatgctgttatcaatgccgagaatgccagtttgaaaacc
atgaacactgaccagttgctcgatctatttgcctctgccgaaacatctaaaaagggagct
actgcctcaaaacgttcagatagtggtatcgatggagacccgaaattaatgggtacaggg
aagggattaaaagccattcttggtggcttggaggagctttgggatcaatcacaatatact
gaggagtacaatttgagccagtttttagcaaaacttaatagctga
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integrated database retrieval system
