Gossypium hirsutum (upland cotton): 107893353
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Entry
107893353 CDS
T04793
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like isoform X1
KO
K07466
replication factor A1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03030
DNA replication
ghi03420
Nucleotide excision repair
ghi03430
Mismatch repair
ghi03440
Homologous recombination
ghi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
107893353
03420 Nucleotide excision repair
107893353
03430 Mismatch repair
107893353
03440 Homologous recombination
107893353
03460 Fanconi anemia pathway
107893353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ghi03000
]
107893353
03032 DNA replication proteins [BR:
ghi03032
]
107893353
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107893353
Transcription factors [BR:
ghi03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
107893353
DNA replication proteins [BR:
ghi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
107893353
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
107893353
MMR (mismatch excision repair)
107893353
DSBR (double strand breaks repair)
HR (homologous recombination)
107893353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
107893353
NCBI-ProteinID:
XP_016673803
UniProt:
A0A1U8IBZ1
LinkDB
All DBs
Position
A13:106894656..106897900
Genome browser
AA seq
629 aa
AA seq
DB search
MPVNLTRNAIAMMNSGDVNSKPLVQVVDIKLIGNSQERYRFLLSDSESTQHAMLATQLNE
QVRTGRVKKGSIIQLIDYICSTVQNRRIIVVLNMETIIPEYEIIGNPKLLMGSEPEANKS
MPNNNLFEPSTRSTNNRYSAPAPANKAQSFQPTIQPAYQPPPNYKIQGPIMKNEAPARII
PIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDR
FYNVIEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESNSTVELCPDEDGSIPRQQFSFR
PITEIESAENNSILDVIGIVISVNPSVPILRKNGMETQRRILNLKDVSGKSVELTLWGDF
CNKEGQKLQEMVDSGLFPVLAVKAGKVNDFNGKSIGTISSTQLFIDPDCPEAQGLRAWFE
SGGRNTASISISKEIMPGGSKNEIRKTLTQIKDEGLGRSDKPDWVTAKATVVFIKTDNFC
YTACPLMIGDRQCNKKVTQSGNKRWLCDRCNQEFEECDYRYLLQVQIQDHTGLTWVTAFQ
EAGEEILGCSAKEMYLLKYELQDDTRFGEIIRSRLFHQYLFRLKIKEELYGDEQRVKITV
VKVDKVNYSAESRYLLDMVTKNLRNRKQF
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgaatctcacgcgcaacgcgattgccatgatgaacagcggcgatgttaactcc
aagccgttggttcaggtggtggatattaagctgattggcaactctcaggagaggtaccgg
tttttgttatccgattctgaatcaactcagcacgcaatgctcgccactcagctcaatgaa
caagtcaggaccggacgagtcaagaaaggatctatcatccagttgatcgattacatttgc
agcactgtccaaaatcgtaggattattgttgtgctgaatatggagactataattccagag
tatgaaataatcgggaatcctaaacttcttatgggttctgagcccgaagctaacaagtca
atgcctaataacaatttgtttgagccttctacgaggtccaccaataatagatatagcgcc
ccagctcctgctaataaggcccagagttttcagccaactattcaacctgcataccagcca
cctccaaattacaaaattcagggcccaataatgaagaatgaagcaccagcacgcattatt
cctattgctgctctaaatccttatcaaggacgttgggctatcaaggctcgagtgactgca
aaaggggaccttcgtcgctacaacaatgctagaggagatgggaaggtcttctcctttgac
ctccttgactctgatggaggggaaatacgagtaacttgcttcaacgctgttgttgatcgc
ttctacaatgttattgaagttggtaaagtttacttgatttcaaagggtagcttgaaaccc
gcgcaaaagaatttcaaccatttgaagaatgagtgggagatattcttggaatcaaattca
accgtggagctttgccctgatgaagatggctctattccaagacaacagttctccttcaga
cctatcactgaaattgagagtgctgaaaacaattctatacttgatgttatcggtattgtg
atatctgttaacccttcagttcctattttgaggaagaatggtatggaaactcagagaagg
attctgaatttaaaggatgtatctggaaagagtgttgagctaaccctttggggtgatttc
tgcaacaaggaaggtcaaaagctgcaagaaatggtcgattctgggcttttcccagttttg
gcggttaaagctggaaaggtcaatgactttaatgggaagtccattggcactatttcttcc
acacagctctttatagatccagattgtccagaggcacagggcctgagagcgtggtttgaa
agtggggggagaaatacagcttctatctcaatttctaaagaaattatgcctggaggatcc
aaaaatgagatacgtaaaaccttgactcagatcaaggacgaaggtctcggaagatctgat
aagccagattgggtcacagccaaggcgactgtagttttcattaaaacagataatttctgt
tatacagcctgcccattgatgattggagatagacaatgcaataagaaagtaacacaatcc
ggtaataaaagatggctttgtgaccgttgcaaccaagaattcgaggaatgtgattacaga
tatcttctccaggtccagattcaagaccatacaggactcacttgggtaacagctttccag
gaagctggcgaagaaatcttgggatgctcggcaaaggaaatgtatttattgaaatatgaa
ttgcaggacgatacccgattcggtgaaataattcgcagccgactctttcaccaatatttg
tttaggcttaaaataaaagaggaactctatggtgacgagcagagggtaaaaatcactgtg
gtgaaggttgacaaggtgaactactctgcagaaagcaggtaccttctcgatatggttaca
aagaatttgcggaatagaaaacaattctga
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