Gossypium hirsutum (upland cotton): 107893466
Help
Entry
107893466 CDS
T04793
Name
(RefSeq) probable CCR4-associated factor 1 homolog 7
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107893466
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107893466
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107893466
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107893466
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
107893466
NCBI-ProteinID:
XP_016673958
UniProt:
A0A1U8ICD6
LinkDB
All DBs
Position
A13:105742949..105744564
Genome browser
AA seq
274 aa
AA seq
DB search
MSGLPKGESVHIREVWNDNLEEEFALIREIVDSYNYVAMDTEFPGVVLRPVGTFKNINDY
NYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDSFCIWQFNFREFNLSEDIFASDSIEL
LRQCGIDFKKNNEKGIDVKRFGELLMSSGVVLNDDVHWVTFHSGYDFGYLLKLLTCRSLP
DSQAGFFDLIKIYFPMVYDIKHMMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTS
CTFRKLRDNFFNGSTEKYAGVLYGLGVQNGQNTN
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtttgcccaagggtgaatcggttcatattcgggaagtttggaacgataatcta
gaggaagagtttgctttgatccgtgaaattgttgatagttataattatgtggctatggac
actgagttcccgggtgtggttctacgccctgtgggaactttcaagaatataaatgattat
aattaccaaactttgaaagataatgttgatatgttgaaattgatccaattgggtctcact
ttttcggatgagaatgggaaccttcccacttgtggaactgatagcttttgcatttggcaa
ttcaatttccgtgagtttaatttaagcgaagatatctttgctagtgattcgattgagttg
ctgcgccagtgtgggattgatttcaagaagaataacgagaaaggtatcgatgtgaagcgg
ttcggtgagcttttgatgtcgtctggggtcgtgttgaatgatgatgtccattgggtcacc
tttcatagtggatacgacttcggatacttgcttaagcttttgacttgcaggagtttgcct
gatagtcaagcagggtttttcgatttgatcaagatatatttcccaatggtatatgatatc
aagcacatgatgaagttttgcaacagccttcatggtggtttgaacaagctcgccgagttg
ttggaagtggaaagagtcggtgtgtgccatcaagctggttccgatagtttgctcacctcg
tgcacctttaggaagttgagagataactttttcaacggctccacagagaaatatgcaggt
gtattgtatggcctaggtgtccagaatggacagaatactaattag
DBGET
integrated database retrieval system
