Gossypium hirsutum (upland cotton): 107893491
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Entry
107893491 CDS
T04793
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107893491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107893491
03041 Spliceosome [BR:
ghi03041
]
107893491
03009 Ribosome biogenesis [BR:
ghi03009
]
107893491
03016 Transfer RNA biogenesis [BR:
ghi03016
]
107893491
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107893491
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
107893491
Spliceosome [BR:
ghi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
107893491
Complex C
U4/U6.U5 tri-SnRNP related factors
107893491
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
Pre-60S particles
Helicases
107893491
Transfer RNA biogenesis [BR:
ghi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
107893491
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
nSTAND3
Late_protein_L2
Motif
Other DBs
NCBI-GeneID:
107893491
NCBI-ProteinID:
XP_016673992
UniProt:
A0A1U8I730
LinkDB
All DBs
Position
A13:105445510..105456554
Genome browser
AA seq
990 aa
AA seq
DB search
MEEESAAPGKRKSPEKSDVTETPKQESAPKRRTLARTCVHEVAVPSGYVSTKDESIHGTL
SNPAYNGEMAKTYQFELDPFQQVSVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQ
RVIYTSPLKALSNQKYRELHQEFNDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSEVL
KEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWICHLHKQP
CHVVYTDFRPTPLQHYVFPMGGSGLYLVVDENEQFREDNFMKLQDSFVKQRPGDWSKNKE
GKSGGRAAKSGGGSGGSDIYKIVKMIMERKFHPVIVFSFSRRECEYHAMSMSKLDFNTKE
EKDDVEQVFRNAVLCLNEEDRCLPAIELMLPLLMRGIAVHHSGLLPVIKELVELLFQEGL
IKALFATETFAMGLNMPAKTVVFTSVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDERGIC
IIMVDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLMSRAEGQMTAEHVIRNSFHQFQ
YEKALPDIGKKVSKLEQEAALLDASGEAEVAEYHKLKLELAQLEKKLMSEITRPERVLYY
LDPGRLIKVREGSTDWGWGVVVNVVKRTPAGLGALPARGGGYIVDTLLHCSPGSSENGVR
PKPCPPCPGEKGEMHVVPVQLPLISALSKIKVSIPADLRPPEARQSLLLAVQELGTRFPQ
GLPKLNPVTDMKIEDQEIVELVKQIEEHEKKLFAHPLHKSQDEHQIRSFQRKAEVNHEIQ
QLKSKMRDSQLQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMF
NGTFNDLDHHQVAALASCFIPVDKSSEQIQLRTEIAKPLQQLQESARKIAEIQHECKLDV
NIDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQ
AVGEVNLESKFAAASESLRRGIMFANSLYL
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagaatcagctgcaccagggaagcgaaagtcacctgaaaagtcagatgtcacg
gagacccctaagcaagaatctgcccccaaaaggagaacactagcacggacatgtgtgcat
gaggtcgcagttccaagcgggtacgtttcaactaaagacgaatccattcatggcacactc
tcgaatccggcctacaatggggaaatggctaaaacttatcagtttgagcttgatcctttt
cagcaagtttctgtagcgtgcttagaaaggaacgagtcagttttggtttcagcacatacg
tctgcaggtaaaactgcggttgctgagtatgcgattgctatggcctttagagataagcaa
agggtcatatatacttcaccgttgaaagctttgagtaaccagaagtacagggagctgcat
caagagttcaacgatgtggggctgatgactggtgatgttaccttgtctcctaatgccagt
tgtctcgtcatgacgacagaaattcttagagggatgctttacaggggctcagaggttttg
aaggaggttgcatgggttatttttgatgaaattcattatatgaaagatagggaaagagga
gttgtttgggaagagagtataatatttttgccaccagcaataaaaatggttttcctttca
gcaaccatgtccaatgccactgaatttgcagagtggatttgtcatttacacaaacagcct
tgccatgtggtgtacacggatttccggccaactcctttgcagcattatgttttccccatg
ggtgggagtggattgtaccttgtggttgatgagaatgagcaatttagggaggacaatttt
atgaagctccaggactcatttgtaaagcagagaccgggtgattggagcaagaataaagaa
gggaagagtggtgggagagctgccaaaagtgggggtggttcagggggttctgacatatac
aaaatcgtaaagatgattatggaacggaaatttcacccagtcattgtttttagcttcagt
agaagagagtgcgaatatcatgcaatgtctatgtctaagcttgactttaatacgaaagag
gagaaggatgatgtagaacaagtttttcgcaatgccgtactgtgcttgaatgaagaagat
agatgtttgcctgccattgaattaatgttaccactgcttatgagaggcattgctgtacac
cattctggtcttcttcctgttatcaaagaactggtggagcttcttttccaggaaggcctt
ataaaggcactttttgccacagaaacttttgcaatgggtttaaatatgccagcaaaaact
gttgtattcacttctgttaagaagtgggatggtgatagccatcggtatataggatctggt
gagtatatccagatgagtggaagggcagggcgccgtggcaaagatgaacgtggtatttgt
attattatggttgatgagcagatggagatgaatacactcaaggacatggttttgggtaaa
ccggctcctttagtcagtactttcagactcagctactattcaattttgaatttaatgagc
cgtgcggaagggcagatgactgctgagcatgtgataaggaattcgttccaccagtttcag
tatgagaaggccttacctgatatagggaagaaagtttcaaagctggagcaggaagctgcc
ttgctagatgcttctggagaggctgaggtagctgaatatcataaactaaaacttgaatta
gcccagttagagaagaagttgatgtcagaaatcactaggcctgaaagagtactttattat
ctcgatcctggacggctgatcaaagtaagagaaggcagtacagactggggctggggagtt
gtagttaatgttgttaaaaggacccctgcaggattaggtgcattgcctgcacgtggtggt
ggttatattgtggatacattacttcattgttcgcctggttctagtgagaatggtgtacga
ccaaaaccatgccctccctgtccgggggagaagggtgaaatgcatgtggttcctgtccag
ttgcctcttatttctgctctgagtaaaattaaagtgtccatacctgctgatcttcggcca
cctgaagccaggcagagtttattacttgcagtgcaggagctagggactcgatttccacaa
ggccttccaaaacttaatcctgttacggacatgaaaattgaagatcaagaaattgttgag
ttagtgaaacaaattgaggaacatgaaaagaagttgtttgctcatccactccacaagtct
caagatgagcatcaaattagatcttttcagaggaaggcagaggtgaatcatgagattcaa
cagctcaagtcaaaaatgcgtgattcccagcttcaaaaattccgtgatgagcttaagaac
cgttcaagggtcctgaagaagttaggccatattgatgctgatggtgttgttcagttgaag
ggacgggcagcctgcttgatagacactggagatgaactgcttgtgacagaactgatgttt
aatggtacattcaatgatcttgatcatcaccaagtagcagcccttgcaagttgtttcatt
ccagtagataaatcaagtgaacaaatacagttgaggacagagattgccaaaccattacag
caactccaagaaagtgcaagaaaaatagcagagatacaacatgaatgcaaattggatgta
aacatcgacgaatatgtagaatcaactgtgagaccatttttgatggatgtgatttattgt
tggtcgaagggtgcaacttttgcagaggtaatacagatgaccgatatatttgagggtagc
attattaggagtgctagaaggcttgatgagtttctgaaccagctccgcgctgccgcacaa
gctgttggagaagtcaatttggagagtaagttcgctgcagcaagtgaaagcctacgtcga
ggtatcatgttcgccaactccctttatctgtaa
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