KEGG   Gossypium hirsutum (upland cotton): 107893602
Entry
107893602         CDS       T04793                                 
Name
(RefSeq) WD repeat-containing protein 48 isoform X1
  KO
K15361  WD repeat-containing protein 48
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    107893602
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107893602
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     107893602
SSDB
Motif
Pfam: WD40 WD40_Prp19 DUF3337 WD40_WDHD1_1st WDR55 WD40_CDC20-Fz Beta-prop_TEP1_2nd EIF3I Beta-prop_EML Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_SCAP Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_WDR90_POC16_2nd Beta-prop_DCAF4 Beta-prop_DCAF12 Beta-prop_RIG_2nd Beta-prop_EIPR1 RAWUL WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_WDR75_2nd
Other DBs
NCBI-GeneID: 107893602
NCBI-ProteinID: XP_016674123
UniProt: A0A1U8ICU6
LinkDB
Position
A13:73730063..73742249
AA seq 761 aa
MHRVSSVGNNANSNRPRKEKRLRYVLSDTDDTKHCAGINCLAVLKSSFSDGCNYLFTGSR
DGTLKRWALDDDAATCSATFESHVDWVNDTVIAGDNTLVSCSSDTTLKTWNCLSDGICTS
TLRQHSDYVTCLAAAEKNTNVVASGGLGGEVFVWDIEAAVTPLSKSSDVLEDNCSNGING
SANSLSISSLRTISSSNSIAAQTAQCHGYVPICAKGHKESVYALAINDSGSLLVSGGTEK
VVRVWDPRTGLKTMKLRGHTDNIRALLMDSTGRYCLSGSSDSMIRLWDLGQQRCVHSYAV
HMDSVWALASTPTFSHVYSGGRDLSLYLTDLTTRESLLLCTKEHPILQLALHGDSIWVAT
TDSSVHRWPAEGKNPQKVFQRGGSFLAGNLSFSRARVSLEGSTPAPVYKEPIFTIPGTPA
IVHYEILNNRRHVLTKDTAGSVKLWEITKGVVIEDYGQVSFDEKKEQLFEMVSIPAWFSV
DTRLGSLSVHLDTPQCFSAEMYSADLNITGKPEDDKVNLARETLKGLLAHWMTKRRQRLG
SQASVNGDVLSGKDITTKSLTHSRIEVDVNAENDSMVYPSFEFSTVSPPSIITEGSQGGP
WRKKITELDGTEDEKDFPGWVLDCVLSNKLPPRENTKCSFYLYPCEGSAVQILTQGKLSA
PRILRIHKVVNYVVEKLDKPSDNANTDGTFSPGLGGRLQHLVVGDGSFRSGLKPWQKPRP
SVEILCNNQVLSPDMSLATVRAYVWKKPEDLVLNYRVIQGR
NT seq 2286 nt   +upstreamnt  +downstreamnt
atgcatcgagtgagcagtgtggggaacaatgccaattctaaccgcccacgtaaagaaaag
aggctgagatacgtattgagtgacactgatgatacaaagcattgtgccggcataaattgt
ttggctgtcctgaagtcatctttctctgatgggtgcaactatctcttcactggaagccga
gatggcacacttaagagatgggcgctggatgacgatgctgctacttgctctgctacattt
gagtcacatgttgattgggtaaatgatactgtaattgctggtgataatacacttgtttca
tgttcatcagacaccacattgaagacatggaattgcttgtctgatggaatttgtaccagc
actctccgtcaacactctgactatgtaacttgtctagctgcagctgaaaaaaataccaat
gtggttgcctctgggggtcttggtggggaggtttttgtatgggatattgaagctgcagtt
actcctctctcaaagtccagtgatgtattggaagataattgttccaacggtatcaatggt
tctgcaaattcattatcaatatcaagtttgcggacaattagctcaagtaacagcattgct
gctcagacagctcagtgtcatgggtatgtccccatatgtgccaaaggccataaagagtcg
gtctatgcattggcaattaatgatagtggaagccttcttgtctctggtggaactgagaag
gttgtgcgagtttgggacccaagaactggattgaagactatgaagctaagagggcataca
gataacattagggctctacttatggattctactggcagatattgtttatcggggtcatct
gattcgatgatcaggctatgggaccttggtcagcaacgctgtgtgcattcatatgctgtg
catatggattctgtttgggcacttgcaagcaccccaacctttagtcatgtttatagtggt
ggcagagatctttctttatatttgacagacttgacaactagagagagtcttttgctttgc
acaaaggagcatccgattttgcagctggcgttgcatggtgatagtatatgggttgcaacg
acagattcttcggttcatagatggcctgctgaaggaaaaaatcctcagaaggtctttcaa
agaggtggttcattcttggctggaaacctgtccttctccagagcacgagtttccttggaa
gggtctaccccagctcctgtttataaagaacccatcttcaccattcccggaactcctgca
atagttcattatgagattttaaataacagaaggcatgtattgactaaggatactgctggt
tcggtaaagctctgggagataaccaagggtgttgtgattgaagactatggacaggtttcg
tttgatgagaaaaaggagcagttgtttgagatggtaagcattcctgcatggttctctgtg
gatacccggcttgggagcttgtctgttcacttggacacccctcaatgcttttctgcagaa
atgtactctgcagatctgaacataactggcaaacctgaggatgataaggtcaatctagct
cgtgaaacccttaaaggcctattggctcattggatgactaaaagaaggcaaagacttggc
tcccaggcttcggttaatggagatgttttatcaggaaaagatattactacaaaaagtctt
actcattcaagaattgaggtagatgttaatgctgaaaatgattccatggtctatccttct
tttgagttttctacagtttcccctccctcaattatcactgagggttcccaaggaggtcct
tggagaaagaaaattactgaattggatggaaccgaggatgagaaggatttccctggttgg
gttttggactgtgtgttgagtaacaagcttccacctcgcgagaacaccaagtgtagcttc
tacctttatccttgtgaaggttcagctgttcagatcctcacacaagggaagttaagtgca
cctcgcatcttgagaatacataaggttgttaattacgtcgtagaaaagcttgacaaacca
tctgataatgctaatactgatgggacattttcgcctggacttggaggacgattgcagcat
ttagtagttggggatggatcttttcggtctggattgaagccttggcaaaagcctcgacct
tcagtcgagattttatgcaataatcaggtattatctccagacatgagcttagctactgtc
cgggcttatgtatggaagaaacctgaggacttggtacttaattatagagtgatacaaggc
agatga

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