Gossypium hirsutum (upland cotton): 107893651
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Entry
107893651 CDS
T04793
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107893651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107893651
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107893651
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107893651
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
107893651
NCBI-ProteinID:
XP_016674191
UniProt:
A0A1U8I7K4
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Position
A13:74884363..74892745
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AA seq
886 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKISASYEQALVDARKQIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVGELESQIDSFEAEIEGLSVKKGKMRPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFDDVDELYSSLPLDKVES
LEDLVAIGPLSKGGPILKTSLAASMSQLPQGGSSQEHVEDTASQDSNSDIAKTPPPKSST
INSSAAATPAGSHVTPAPLNLPPHSLSGASSPSVLPDSNSAQGLLESTGTTNPPPVNLSN
ATKEEDITNFPGRRSSPSLADTEVRGIGRGLSGQPSSTIPLVSGSVASGNGALGAVPPAS
DMAKRNILGVDERLGNSSMGQSLTSPISNRMILPQAAKSNDGNAPVDSSNPNESAGLPGR
AFSPSMVSGMQWRPGSSFQNQNELVQFRGRTEIAPDIREKFLQRFQQVQQQGHSNLLSSM
SPLAGGNHNQFSAQQQSPLMQQFNPQSSCFSIPPGLGHGGQAPGLNSVTSASLQQQPNSI
HQQSGQQALATSVPKDADVGVAKVEEQQPQSLPDGSSSEAIQTSGLAKNLMNEDDLKAPY
AIDSPAAVSGSLTEPARNIRDIDLSPGQPLQYNQSSSGLGVIGRRSVSDLGAIGDSLSGS
TNSGGMHDQLYNMQMLEAAYYKIPQPKDSERVRSYTPKHPAATPASYPQVQAPIVNNPAF
WERISMDGYGTGTDTLFVAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKIA
TDEFEQGTYVYFDFHVANDDHQHGWCQRIKTEFIFEYNYLEDELIV
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgagtcgcaagctacaaggagagatcgatcgtgttctcaagaaagtccaagaa
ggtgtcgatgtgttcgatagcatctggaacaaggtttatgatactgataatgcgaatcag
aaggagaaatttgaggctgacttgaagaaggaaatcaagaagctgcaaaggtacagggac
cagatcaagacttggattcaatcgagcgagatcaaggataagaaaattagtgcctcttat
gagcaggccctggtggatgctcggaagcaaattgagcgtgaaatggaaagatttaagatc
tgtgagaaggagactaagacaaaagcattttctaaagaaggcttgggccaacaacccaaa
actgatccgaaggagaaggctaagtcagagacaagggattggttgaacaatgtggttgga
gagttagaatcccagattgatagttttgaagctgagattgaggggctgtctgtgaagaaa
ggaaagatgagaccacctagactgacacacttggagacatcaattacacgacacaaagct
catataatgaagttagaattgattttgagactattggacaatgatgaattgagtccagag
caagtcaatgacgtgaaagacttcttggatgattatgtggaacgaaatcaggaggacttt
gatgaatttgatgatgttgatgagctctacagctcattacctctagacaaggtggagtct
cttgaagatctagttgcaattggcccactttccaagggtggtccaatcttgaagacatct
ttggcagcatcaatgtctcaattgcctcagggtggttcctctcaggagcatgttgaagat
acagcttcccaggatagtaattctgatatagcaaagaccccacctccaaaaagtagtaca
attaattcttctgctgcagcaacaccagctgggagccatgtaacccctgctccactgaat
cttccaccacatagtttgtctggtgcttcatctccttcagttcttccagattcaaattct
gcccaaggcctcttggaaagcactggcaccaccaatcctcctcctgtaaatttatctaat
gctacaaaggaagaagatatcacaaacttccctggccgtaggtcatctccatcccttgct
gatactgaagtacgaggcattggtagaggtctatccggtcagccttcatctactataccc
cttgtttctggaagtgtggcttctggtaacggggcccttggtgctgtccctcctgcctct
gacatggcaaaaagaaatattttgggagttgatgagagacttgggaatagtagcatgggg
caatctttgacatcacctattagtaacagaatgatcttgcctcaggcagccaagtcaaat
gatggaaatgcacctgttgattctagtaatcctaacgagtctgctggactacctggcaga
gcattttctccttcaatggtttctggcatgcagtggaggcctggaagctcgtttcagaat
caaaatgagctggtgcagtttcgtggaagaactgagatagctcctgatataagggaaaag
tttttgcaacggttccagcaagtgcagcagcaaggccatagcaacctgcttagcagcatg
tctcctcttgctggaggaaatcataatcagttttctgcacaacaacaaagccctctcatg
cagcagttcaatcctcaaagctcgtgtttctcaatcccacctggtctgggacatggtggc
caagcacctggtcttaatagtgttacctctgcgagcttacagcagcaaccaaactcaatc
caccagcagtctggtcagcaggcattggcaacaagtgttcctaaggatgctgatgttggc
gttgcaaaagttgaggaacaacaaccgcagagtttacctgatggttcaagttctgaagct
attcaaacttctgggcttgccaaaaatctcatgaatgaagatgatttgaaagctccatat
gcaattgattctcctgctgctgtctcaggctctttgacggaacctgctcgaaatattagg
gatattgatctttctcctggacaacccttacaatataaccaatcttctagtggtcttggt
gttattggccggagaagtgtttccgatcttggtgccattggtgacagcctcagtggttca
acaaattctggaggaatgcatgatcaattgtacaatatgcagatgcttgaggctgcatat
tacaaaattccccaacctaaagactcagaacgagtgaggagctatactccaaagcaccct
gcggcaacacctgctagttaccctcaagttcaggcacccatagtgaataatcctgccttc
tgggaacgcataagcatggatggatatggcactggcactgatacactgtttgttgcattt
tattatcaacagaacacttatcaacaatatctagctgcaaaggagctgaagaagcaatct
tggagataccatagaaaatacaacacatggtttcagcggcatgaggaaccaaaaattgct
actgatgaatttgaacagggaacctatgtatactttgattttcacgtggcaaatgatgac
caccaacatggatggtgtcagagaatcaagactgagttcatctttgagtataactatctg
gaagatgaacttatagtatag
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