Gossypium hirsutum (upland cotton): 107894254
Help
Entry
107894254 CDS
T04793
Name
(RefSeq) protein CHROMATIN REMODELING 25
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107894254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107894254
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
107894254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
SWI2_SNF2
AAA_22
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
107894254
NCBI-ProteinID:
XP_016675008
UniProt:
A0A1U8IF75
LinkDB
All DBs
Position
A13:complement(5048738..5056539)
Genome browser
AA seq
957 aa
AA seq
DB search
MARERRSTSSTDEDEEISSGSDSSDSSDEFAVDCSEEEEEGEVEENDDDGGESPAHHPPS
DGDLKSKNVDALLRGNLVVRRQSLLPRVLSVTEGAAVCRKPFKPPCSYGYSNGKENLARR
LWARKRFVPWGSLTPALVAIAKPLGIARPESDEADIVEEIVTLPPGVEPLVLWQPEQSED
GPIEVVPIAVDPLLVRFLRPHQREGVQFMFECVSGLYSAANINGCILADDMGLGKTLQSI
TLLYTLLRQGFDGKPMVKKAIIVTPTSLVSNWEAEIKKWVGQRVQLIALCESSRDDVVSG
IDSFTSPRSLLQVLIVSYETFRMHSSKFCQSEACDLLICDEAHRLKNDQTITNRALAALS
CKRRILLSGTPMQNDLEEFFAMVNFTNPGILGDVAFFRRYYETPIICGREPTSSEEEKKL
AAERSSELSAIVNQFILRRTNALLSNHLPPKIVEVVCCKLTPLQSELYNHFIHSKNVKKV
ITEETKQTKILAYITALKKLCNHPKLIYDTIKSGSPGTTGFEDCMRFFPPEMFSGRSGSW
TGGDGAWVELSGKMHVLARLLAHLRQRTDDRIVLVSNYTQTLDLFAQLCRERRYPYLRLD
GTTSISKRQKLVNRFNDSTKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAA
ARVWRDGQKKRVYIYRFLSTGTIEEKVYQRQMSKEGLQKVIQQEQVDSVKGQGNVFSTED
LRDLFTFYDNVRSEIHGKMNCNRCKNDGSENIGEQERCESENGSYGSDQEVFDIGGFAGI
AGCLDKLKSSEKQVGSPLEEDLVSWGHHFHSESVPDSILQASAGGEVTFVFTNQVDGKLV
PIESKVNPRMQEREGGKSQNIGKVSHMIERERNKIQNSVKQNLDYRSKFLSKHHKLLNSV
SSNRNSLMITPPPSSSTSPIPLQGTLHKTVSSGPSLGIQLPLKRSSRASVEHDDDFQ
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atggcgagagaacgacggtccacgtcatcaacggatgaagacgaagaaatttcctccggt
tccgattccagcgattcaagcgacgaatttgccgttgattgctcagaagaagaagaagaa
ggagaagtagaagaaaacgacgacgatggtggagaatcccccgcgcatcatccaccgtcc
gatggagatctcaaatctaagaacgtcgatgctttgttgaggggcaaccttgttgtaaga
agacaatcgctgcttccacgagttctttcagtgacagaaggagctgcagtttgtaggaaa
ccgtttaagcccccatgttcttatggctatagtaacgggaaagaaaatcttgcacgtcgt
ctttgggctcggaagcggtttgttccttggggctctttgacgccagcattagttgcaata
gccaaaccgctgggtatagctagaccagaatcagatgaggctgatattgtggaggaaatt
gtgactctgccgccaggtgttgagcctttggttttatggcaacctgaacaatccgaagat
ggacccatcgaagtagtgcccatagcagtggatccgttgctagttcgtttccttcgaccc
catcaaagagaaggagttcagttcatgtttgaatgtgtatccgggttgtatagtgctgcc
aatataaacggatgcattcttgctgatgatatgggtttgggaaagacattgcagtcaatc
actttactatatactcttcttcgtcaagggtttgatgggaagccgatggttaagaaggcc
ataattgtcaccccaaccagtcttgtcagtaactgggaggcagaaatcaagaagtgggtt
ggacagagagttcaacttatagctctctgtgaaagcagcagagatgacgttgtctctgga
attgacagcttcacaagtccccgtagcttgttgcaggtattgattgtttcatatgagaca
tttaggatgcattcatcaaaattttgccaaagtgaagcttgtgatcttcttatttgtgat
gaggctcacaggctgaaaaatgaccagacaataacaaacagggcattggctgctctctct
tgtaaacgccggattttgttatctggaacccccatgcagaatgatcttgaagagttcttt
gccatggtgaacttcacaaatccagggattttgggtgatgttgcattctttcgtcgttac
tacgagacaccaataatttgtggaagagaaccaacttctagtgaagaagagaagaagcta
gctgcagaacgttcttcagaattaagtgcaatagtgaatcagttcatattgaggaggact
aatgcgttgctatcaaatcatctgcctccaaagatagttgaagtagtatgctgcaagttg
actcctcttcagtctgagttgtacaaccattttatacactcaaaaaatgttaaaaaagtc
atcactgaagaaacaaagcaaacaaagattttggcttatattacagctcttaagaagctc
tgcaatcatccgaagctcatttatgataccataaaaagtggaagtccgggaactactggt
tttgaggactgtatgcggtttttcccaccagagatgttctcaggaagatcgggatcctgg
actggtggtgatggggcttgggttgaactatctgggaaaatgcatgtattagctcgattg
ctggctcatttacgtcagagaactgatgatcgcattgttcttgtttcaaactatacacag
acactggacctatttgctcaattgtgtcgagaaagaagatatccatacttgaggcttgac
ggaaccacatcaattagcaaaaggcagaaactcgttaatcgctttaatgactcaaccaag
gatgagtttgtgttcctattaagtagcaaggcaggtggctgtggtctcaatttgattggt
ggtaatcgactggtcttgtttgaccctgattggaacccagctaacgataagcaagctgct
gcaagggtttggagagatgggcagaaaaaaagagtttatatttacagattcctaagtact
ggaacaattgaagaaaaggtgtaccagcggcaaatgtcaaaggaagggctgcaaaaagtt
atccagcaggagcaagtagacagcgttaagggacagggaaacgttttctcaacggaagat
ttacgtgaccttttcacattttatgataatgtgaggtctgaaattcatggaaagatgaac
tgcaatcggtgtaaaaatgatgggtctgagaacataggagagcaggagagatgtgaatca
gaaaatggaagctatggatcagatcaagaggtttttgacataggtggatttgcaggaata
gctggatgtctggataagctaaagagctcagaaaaacaggtggggagtcccttagaagag
gatttagttagctgggggcatcattttcactcagaatcagtacctgattctattctccaa
gcttcagctggcggtgaggtcacatttgttttcaccaatcaagtagatgggaagcttgtt
cctattgaatcaaaggtaaacccaaggatgcaggaaagggagggcggtaaaagccagaac
attggaaaggttagtcacatgatagaaagagaacgcaataaaatccagaattccgtgaag
caaaacctggattataggtcaaaatttttatccaaacatcacaaactattaaattctgtt
tcttccaatagaaattctttgatgataacaccaccaccatcatcatctacttcacccatc
cctttacaaggtacacttcataagaccgtatctagtggaccttctcttggaattcaatta
cctcttaaaagatcttctcgtgcttctgtagaacatgatgatgattttcaatag
DBGET
integrated database retrieval system
