Gossypium hirsutum (upland cotton): 107894289
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Entry
107894289 CDS
T04793
Name
(RefSeq) polyadenylate-binding protein 8
KO
K13126
polyadenylate-binding protein
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107894289
09123 Folding, sorting and degradation
03018 RNA degradation
107894289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107894289
03041 Spliceosome [BR:
ghi03041
]
107894289
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107894289
mRNA cycle factors
Stress granule specific factors
107894289
Spliceosome [BR:
ghi03041
]
Complex C
Other components
Complex C specific factors
107894289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RRM_7
RRM_Nup35
SET_assoc
RRM_MARF1
DUF5062
GH97_C
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
107894289
NCBI-ProteinID:
XP_016675060
UniProt:
A0A1U8IA19
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All DBs
Position
A13:complement(5454632..5459571)
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AA seq
648 aa
AA seq
DB search
MAQIQVQGQNGSVNNGAGGGNNQFVPTSLYVGDLDSSVTEAQLYDYFAHVGPVLTVRVCK
DLSTRRSLGYGYVNYGNPQDAARALDLLNFTLLNGKPIRIMYSNRDPSLRKSGAGNIFIK
NLDKGIDHKALHDTFSAFGNILSCKVATDSFGQSKGYGFVQFDNEESAQKAIEQLNGMLM
NDKQVYVGPFVRKQERDSSISNVKFNNVYVKNLSESTSDDDLKTIFGEFGLITSAVVMRE
PDGKSKGFGFVNFKNADDAARAVESLNGKKFDDKEWYVGKAQKKSERELDLKLRFEQSMK
EAADKFQGANLYVKNLDDSISDEKLKELFSQYGIITSCKVMRDTSGISKGSGFVAFSTPE
EASRALAEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQMRPVTMSPSVAPRMPMYPPG
GPGLGQQIFYGQAPPAMFPQPGFGYQQQLVPGMRPGGAPMPNFFVPMVQQGQQGQRPGGR
RAGAGQQSQQPVPLMQQQMLPRGRVYRYPPGRGLPDVSMPNIAGGMLSVPYDMGGMPMRD
ASISQPIPIGALASALANATPDQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVL
HLLESPEALKAKVAEAMEVLRTVAQQQQTGGAAADQLASLSLSDNLVS
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagattcaagtccaggggcaaaatgggagtgttaacaatggagctggtggaggg
aacaaccagtttgtaccgacgtcgctttatgttggggatctggattcaagtgtgacggaa
gctcagctttatgattactttgcccacgtgggtccagtgcttacggttcgggtttgcaag
gacttgtcaacccggaggtctcttggttatggttatgtcaattatggaaatccacaagat
gctgcaagggcattggaccttctgaacttcactcttctgaatggaaagcctatcaggatt
atgtattctaatcgagaccctagtcttcgtaaaagtggtgctgggaatatttttatcaag
aatttagacaagggaattgaccacaaagccttgcatgatacgttttctgcatttgggaac
attctctcttgcaaggtagccacagactcctttggtcagtcaaaaggttatggctttgtt
caatttgacaatgaggaatctgcccaaaaagcaatagagcagctgaatggcatgctaatg
aatgataagcaagtctatgtgggcccctttgttcgcaagcaggaaagagacagttctatc
agcaacgttaaatttaacaacgtctatgtaaagaatctctcagaatccacaagtgatgac
gatttgaaaaccatttttggcgaatttggtctgattactagtgctgtggtgatgagagaa
ccggatgggaaatccaagggctttgggtttgtaaactttaagaacgcagatgatgctgct
agggctgtggagtctctgaatggaaagaaatttgatgataaggagtggtatgttgggaaa
gcgcaaaagaaatctgaaagggagcttgatctgaaacttcgatttgagcagtcaatgaaa
gaggcagcagataagtttcaaggagcaaacttgtatgttaagaatttggatgacagcata
agtgatgaaaaacttaaagagctattctctcaatatggtatcataacgtcatgcaaggtt
atgcgagatactagtgggataagcaaaggatcagggtttgttgcattttcaactccagaa
gaagcatcaagagctcttgcagagatgaatggcaaaatggttgtcagcaaacctctctat
gttgcactagctcaaaggaaggaagataggagagccaggttacaggctcaattttctcaa
atgcgaccagttacaatgtcaccttcagttgctcctcgtatgccaatgtacccacctggt
ggtccaggtcttgggcagcaaatattttatggtcaagcacctccagcaatgtttccgcag
cctggatttgggtatcaacagcagctcgtccctggtatgaggcctggtggagctcccatg
ccaaatttctttgtaccaatggttcaacaaggccaacagggtcagcgtcccggtggtaga
agggctggggctggtcagcaaagtcagcaaccagttccattaatgcagcagcagatgcta
ccgcgagggcgggtctatcgctatccaccagggcgtggtctacctgatgtttcaatgcct
aacattgctggaggcatgctttctgttccatatgatatgggtggcatgccaatgcgtgat
gcatcaatttctcagccaattccgataggagccttggcctcagccctagcaaatgctaca
ccagatcagcagagaacgatgctgggagagaatctttatcctctagttgaacagctggag
cctgatgcagcagctaaagttacagggatgcttctggagatggatcagactgaggttttg
catttgctcgagtcaccagaagctctaaaagcgaaggttgctgaagcaatggaggttctt
agaactgtggctcagcagcaacaaactggtggtgctgccgctgatcaactggcttcattg
tcattaagtgacaaccttgtctcctga
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