Gossypium hirsutum (upland cotton): 107894311
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Entry
107894311 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: DNA polymerase zeta catalytic subunit-like
KO
K02350
DNA polymerase zeta [EC:
2.7.7.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
107894311
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107894311
Enzymes [BR:
ghi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
107894311
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
TLS (translesion DNA synthesis) factors
B-family DNA polymerases
107894311
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
POL3_N
REV3_N
DNA_pol_B_exo1
zf-C4pol
divDNApol
Motif
Other DBs
NCBI-GeneID:
107894311
NCBI-ProteinID:
XP_040931047
LinkDB
All DBs
Position
A08:complement(122442416..122454324)
Genome browser
AA seq
2041 aa
AA seq
DB search
MLNSQSDSSVFSVRIVSIDHYMAPPIPGFDVCYSSFQGEKVNEVPVIRIYGSTPAGQKTC
LHVHRALPYLYVPLADMLPQSTRILQEGDECTHGLALALEKALKLKGGAGSKRQHVHGCS
LVRAKKFYGYHSSEELFVKIHLYYPHDVSRAANLLLAGAVLDKILQPHESHIPFILQFLV
DYNLYGMGHLHLSGMKFRNPIPDLFHPRKFNCYGQHEQKVDHLTSGSGGFQADSSSDVCL
SSPIWISSTIPSEWMWHVPNELHESSVQDICNVKRRSLCELEGDTTIDDILNHQFKIYTS
LSQTSTDVKMVQSLIPIWEEEYKRTGMHERVLLSDPDKPLPEDVLKALSLGLGFDNKLME
LCSKAENLPCSDLGFEHSVLPSADDGNLVGHTHINSEHNVPQARSCSKEQNQLGSLPQHC
KPCEKEMNTALSEDKDVSPVLLSVGEIHSSETLLPSNSKATDTEALGLLRWLATSHAAED
INSDDELVRESILTPLLPATTIDKVLEKASTDYESESQKECQDILDSVEDLIEFEGLKDR
TYNSFDQTQVSSGKTIPQLDGSSDDLPLSPSAGSVTNSSKRDIKTDYKKSSQDSDKTLSI
KRKRKISLWGSLPLSVTEKGKDNLNSVGFNITEACADEIKEYLGRSFPAENNLGKTSNRL
NVNIDANDCNKTEASTLVECSVRDLMRKKRSRHIESADCGFVRSESVHLKGEKETPNFFC
PKQLDFHELHDKLDKKAPGSLNHRPSITNVQEELQEAVGFKPTHSDPTDCILPQISGVYN
PPQANTGNPEQMGKTSTVKLYPEKHDSAISISPCETCNSKKFDLLAASVEPVTPDADTLQ
SHKEIVSPDERMQQIGTSGSWCLSVSSCKHEVLGMDGYILKDYNASGTSLSTDKLMLLDA
MTDKKDLQNEDCGGGPGGQHGPHTGLAVDNEEKPVELVGMSFCKRPPAADWNEGTTENVS
HTHTTRYWPPVFIEENYQVASGRALDEILPFFSGDREETESQNNFIENKNSKFQEAALGV
PTHYQNDGSFLYLLTPVFSPPSADSVYGWLSCVDKGASKQRNALSAESPPLTGSSECLIA
LENSLPVNYNEDLIETTSKYHTGPIWEQGHPEKNVVLGSEVKPCCDESTCLSEGKVTKVN
SCSNGSQDLSQISGPDGKSMPTPLSKIGFRDPASVGAGQQLTVLSLEVHTESRGDLRPDP
RFDAINVIALAIQNDNDYVTEVYVLLYSNTGFCQRSLDGISGFKVFVFDEEKHLFGQFMK
VLCSLDPDILMGWDVQGSSLGFLAERASYLGIGLLNKISRTPSETKIKAEETNISEESLE
DELLLKPLVADNIVTEDAIIEDEWGRTHASGVHVGGRIVLNVWRLMRSEVKLNMYTVEAV
AESVLGXKIPSISYKVLTKWFSSGPAQARYRCVEYVVERAKLNLEMMNQLDMINRTSELA
RVFGIDFFSVLSRGSQFRVESMFLRLAHTQNYLAVSPGNQQVACQPAMECLPLVMEPESG
FYADPVVVLDFQSLYPSMIIAYNLCFCTCLGKIASSEVNTLGVSSYAPDPNVLRDLKDQL
LLTPNGVMYVPSKVRKGVLPRLLEEILSTRIMVKQAMKNLTPSQKVLQRIFNARQLALKL
IANVTYGYTAAGFSGRMPCAELADSIVQCGRGTLEKAISYVHAHEKWKSNVIYGDTDSMF
VLLKGCTVEESFKIGHEIATAITAMNPYPVTLKMEKVYHPCFLLTKKRYVGYSYESPGQV
KPIFDAKGIETVRRDTCGAVAKTLEQSLKLFFEHQDISKVRAYLHRQWTRILSGRVSLQD
FIFAKEVRLGTYSTKVSSLPPAAIVAAKAMRADPRAEPRYAERVPYVVIHGEPGARLVDM
VVDPLEILAVNSPYRLNDLYYINKQIIPALQRVFGLVGGDLNRWFSEMPRPAREAFGKCG
VHALNPQRTRIDYYYLSKHCILCGELVQASTHLCSKCSENKTAVVAAITGRTSKLEREMQ
HLVAICRHCGGGDWLVESGVKCNSLACSVFYERRKVQKELQGLSAVATDKGFYPECMVEW
F
NT seq
6126 nt
NT seq
+upstream
nt +downstream
nt
atgttgaattcgcagtcagattcgagcgttttcagcgttcgaatcgtgtccatcgatcat
tacatggcaccgccaatccctggcttcgatgtttgctacagtagctttcaaggtgaaaaa
gttaatgaagttccagttattcgaatttatggttcgacaccggctggtcagaagacttgt
ttgcatgttcatagagctttgccctatttatatgttccattggcagatatgttacctcag
agcactcgtatactccaagaaggtgatgaatgcacacatggcttagctcttgccttagaa
aaagccttgaagcttaaaggtggtgctggttcgaaacggcagcatgtccatggctgcagc
cttgtacgagcaaagaaattttatggttatcattcatctgaggagctatttgtgaagatt
cacctctactatccacatgatgtctctcgtgctgccaatcttcttttggcaggtgccgtg
ctggataaaatcttacagcctcatgaatcgcacattccatttattctccagtttcttgtg
gattacaacttgtatgggatgggtcatcttcatttatcagggatgaagtttcgtaatccc
atacctgatcttttccatccaagaaaatttaattgctatggtcaacatgagcagaaggtg
gatcacttgacatcaggttctggtggtttccaggcagattcaagttctgatgtgtgctta
agttctccaatttggatatcttccacaattccgagtgaatggatgtggcatgttccaaat
gaacttcatgaatcttcagtccaagacatttgcaatgttaaacgtcgaagtttatgtgaa
cttgagggagatactactatagatgacattcttaaccaccaattcaaaatatatacatct
ctatcacagacctctaccgatgtgaaaatggttcagtcacttattccgatttgggaggag
gagtataaaaggacagggatgcatgagagagttctactatctgaccctgacaagccactt
ccagaagatgttctaaaagctctctcacttggtcttggatttgacaacaaactaatggaa
ttgtgcagcaaagctgaaaatttgccttgcagtgacttgggatttgaacactcagtcctg
ccttcagctgatgatggaaatttggttggacatacacatatcaattcagagcataatgtt
ccacaagctcggagttgttcgaaagaacaaaaccagctaggatctctccctcaacactgt
aagccatgtgaaaaggagatgaatactgcattatctgaagacaaagatgtatctcctgta
ctactgtctgttggtgaaattcattcatcggaaacgctactgccctctaactcaaaggct
acagatacagaagctttggggcttttgaggtggcttgccacttctcatgctgctgaagat
ataaactcagatgatgagcttgttcgtgagtctattctgactcctttgttacctgcaaca
accattgataaagtgctagagaaagccagtacagattatgagagtgaatcacagaaggaa
tgtcaggatattcttgattcggttgaggatttaatcgaatttgagggtctgaaggatagg
acttacaattcttttgatcaaacccaagtctcatcaggcaaaactattccccaactagat
ggttccagtgatgatctacctttatcaccttctgcaggatcagttacaaattcatcaaaa
agagacataaaaactgattataagaagtcttcacaggatagtgataaaacattaagtatc
aaacgcaaaaggaaaatatctttatggggctctttacctctttccgtgacagaaaagggg
aaggataacttgaatagtgttggtttcaacattactgaagcatgtgcagatgaaattaaa
gaatatttaggcagaagtttcccagctgaaaataatttggggaaaacttcaaatcgttta
aatgtaaatatagatgccaacgattgcaataaaacagaagcaagcacattagttgaatgc
tctgtacgggatttgatgagaaaaaagcgaagccgccacattgagtctgctgattgtgga
tttgttaggagtgaaagtgttcatctgaagggggaaaaggaaacacctaatttcttttgc
ccaaaacaattagattttcatgagttacatgataagcttgacaagaaggcccctggttct
ctcaaccataggccatcaattaccaatgtacaagaagaacttcaggaggccgttggcttc
aaacctacccattctgatccgacagattgtattctaccccagatttctggcgtttataat
ccaccacaggctaacacaggcaatcctgaacaaatgggtaagacatcaacagtgaagctt
tacccggagaaacatgactcagcaatttctattagcccttgtgaaacttgtaacagtaaa
aagtttgaccttctagcagcttctgtagaacccgtaactcctgatgcagacactttacaa
tcccataaggagatagtttctcctgatgagagaatgcagcaaatagggactagtggctct
tggtgtttgtcagtgtcttcatgtaagcatgaagtgcttggaatggatggttacattctc
aaagattacaacgcgagtggaacttccttatctactgacaaacttatgctcttggatgca
atgactgacaaaaaagatttgcagaatgaagattgtggtggtggtcctggtggacaacat
ggcccccatactggcttggctgttgacaatgaggaaaaacctgtggagttagttggcatg
agcttctgcaagagacccccagcagcagattggaatgaaggaactactgaaaatgtttcc
catacacatactaccagatattggcctccagtttttattgaggagaattatcaagtagca
tcagggagagctttggatgagattctcccttttttttcaggggacagagaagagacggaa
agtcaaaacaacttcattgaaaataagaactctaaatttcaagaagctgccttgggcgtc
cctactcactatcaaaatgatgggtctttcttgtacctgttaacacctgtgttttcaccc
ccttctgcagattctgtgtatggatggctgtcatgtgttgacaaaggagcttctaaacag
agaaatgcactatcagcagagtctccacctttaacaggctcttctgagtgtctgattgcc
ctagaaaactctttgcctgttaactataatgaggatttgattgaaaccacttctaaatat
cacacgggaccaatctgggaacaagggcatccagagaagaatgtggtccttggttcagaa
gtgaagccttgctgtgatgaatcaacatgtctaagtgagggaaaagttacgaaagttaat
tcatgcagcaatggctcacaagatctgtctcagatttcaggtccagatggaaaatccatg
cccactccgctaagcaaaattggatttcgagatcctgcaagtgtcggtgctgggcagcag
cttacagtgttaagcttggaggttcacacagaatccagaggagatctacgacctgatcct
cgatttgatgccattaatgtcatagctcttgcaattcagaatgacaatgattatgtgact
gaagtttatgtgcttttgtatagtaacactggattctgtcagaggagtcttgatggaata
tctgggtttaaagtgtttgtttttgatgaggagaagcacttatttggtcagtttatgaag
gttttatgttctcttgatcctgatattttaatgggttgggatgtacaaggtagttctctt
ggttttctagctgaaagagcttcatatctcggcataggattgcttaataaaatatctagg
acaccatctgaaaccaagataaaagctgaagaaactaacatttctgaagagagtttagaa
gatgaattgttgcttaagccattggttgctgataatattgtgactgaagatgcaataata
gaggatgaatggggccgaactcatgcaagtggtgtccatgttggtggcagaattgtcctc
aatgtctggcggttaatgcgtagtgaagttaaacttaatatgtatacagttgaagctgta
gccgaatctgttttggggtgaaaaattccatcgatttcttataaagtattgacaaaatgg
ttttcaagtggtcctgcacaggcaaggtacagatgtgttgaatatgttgttgaaagggca
aagttgaatttagagatgatgaatcaacttgatatgataaatcgaacatcagaacttgct
cgtgtttttggcatcgatttcttttctgttctctctcgaggttctcagtttcgtgttgaa
tccatgtttctgaggttggcacatacgcagaattatcttgctgtttctcctggaaatcag
caggttgcttgtcaacctgcgatggagtgtttgcctcttgtgatggaacctgaatctggc
ttctatgcagatccagttgttgtgttggactttcagtctctttatccatcgatgataatt
gcttacaatctttgcttttgtacatgccttggaaaaattgcaagttctgaagtaaatact
cttggggttagctcatatgcaccagatccaaatgttttgcgggatttaaaagaccaactg
ctgcttacaccaaatggtgttatgtatgtaccttcaaaggtacgcaaaggagttcttcct
cgcttactggaggaaatattatcaaccagaataatggtgaaacaagcaatgaagaatttg
actccttcacagaaagttcttcagaggatattcaatgcaagacagcttgctttgaagctg
atagcaaatgtaacatatggttatactgctgctggatttagtggtcgcatgccttgtgcg
gagcttgcagacagtattgttcaatgtggtcgtggcacacttgaaaaagctatttcctac
gtacatgcacatgagaaatggaagtctaatgtcatatatggtgacactgacagcatgttt
gtcctccttaaggggtgcactgtcgaggaatcattcaaaatagggcatgagattgcaact
gcaataactgcaatgaacccatatccagttacactgaaaatggagaaagtctatcaccca
tgttttctccttactaagaagcgctatgttggttatagttatgagagccccggccaagtc
aaacctatttttgatgctaaaggcattgagacagttcgcagagatacttgtggtgctgtt
gcgaagacattggaacagtcattgaaactcttttttgagcatcaagatatatcaaaggtt
agagcatatttgcatcgtcaatggacaaggattttgtctggtagggtttcgcttcaggat
tttatttttgcaaaagaagttcgcttgggaacctatagtacaaaagtaagttctctacca
ccagcagcaattgtggcagctaaagcaatgagagcagatcccagagcagaaccacgatat
gcagagcgagtaccctatgttgttatccacggggagcctggggctcgcctggttgacatg
gtggttgatccattggaaattttggctgttaactccccatacagattaaatgatttgtat
tacatcaacaaacagataatcccagcattgcagagagtttttgggcttgttggtggtgac
ttgaaccgatggttctcagaaatgccccgccctgccagggaagcttttggtaaatgtggt
gtacatgctctaaatccacagcgaacaagaattgattactattatctttcaaaacattgt
atactctgcggtgaattggttcaagcatcaacccatctgtgtagtaaatgttctgaaaac
aaaactgcagttgtagctgctataactgggaggacatcgaaactagagagagaaatgcag
caccttgttgctatatgccgacactgtggaggaggggactggcttgtggagagtggggta
aagtgcaattcactagcgtgctcagttttctatgagaggcgtaaagttcagaaggaactt
caaggtctgtctgccgttgccactgataaaggtttctatcccgagtgtatggtggagtgg
ttttaa
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