Gossypium hirsutum (upland cotton): 107894924
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Entry
107894924 CDS
T04793
Name
(RefSeq) transcription elongation factor SPT4 homolog 1 isoform X1
KO
K15171
transcription elongation factor SPT4
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
107894924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107894924
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107894924
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
107894924
RNA polymerase I system
107894924
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
107894924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt4
Motif
Other DBs
NCBI-GeneID:
107894924
NCBI-ProteinID:
XP_016675580
UniProt:
A0A1U8IBJ9
LinkDB
All DBs
Position
A13:14188399..14190681
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AA seq
157 aa
AA seq
DB search
MGTAPAQIPTSFGHELRACLRCRLVKTYDLFRESGCDNCPFFKMDGDNERVVDCTTPNFN
GMISVMDPARSWAARWLRVGRFVPGCYTLAVSEALPEDLQTLLPLCSMQLSSSSGSTMII
FSFLSPLLACRILGAAVAYLQALCEEVHVQYVPPKRV
NT seq
474 nt
NT seq
+upstream
nt +downstream
nt
atggggaccgcgccggcgcaaattccgacgagcttcggacacgagctcagggcttgcctt
cgttgccgtctcgtcaaaacatatgatctgttcagagaatcaggatgcgataactgccca
ttctttaagatggatggagataatgagcgcgtcgtagattgcactactccgaatttcaat
ggtatgatatctgtgatggacccggctagaagttgggctgctcgttggctgcgagttgga
agatttgtccctggttgttacactcttgcagtttcagaggcacttccagaggacttgcag
acattgctgcctttgtgctctatgcaactatcttctagcagtgggtctacgatgataata
tttagtttcctctctccattattagcgtgtcgtattttgggagctgcagtggcatacttg
caggctttatgcgaagaagttcatgtgcagtatgtgccaccgaaacgggtgtaa
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