Gossypium hirsutum (upland cotton): 107896231
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Entry
107896231 CDS
T04793
Name
(RefSeq) chaperonin 60 subunit beta 2, chloroplastic isoform X1
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107896231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107896231
03110 Chaperones and folding catalysts [BR:
ghi03110
]
107896231
03029 Mitochondrial biogenesis [BR:
ghi03029
]
107896231
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ghi04147
]
107896231
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
107896231
Messenger RNA biogenesis [BR:
ghi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
107896231
Chaperones and folding catalysts [BR:
ghi03110
]
Heat shock proteins
HSP60 / Chaperonin
107896231
Mitochondrial biogenesis [BR:
ghi03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
107896231
Exosome [BR:
ghi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
107896231
Exosomal proteins of other body fluids (saliva and urine)
107896231
Exosomal proteins of breast cancer cells
107896231
Exosomal proteins of colorectal cancer cells
107896231
Exosomal proteins of bladder cancer cells
107896231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
107896231
NCBI-ProteinID:
XP_016676828
UniProt:
A0A1U8IKB5
LinkDB
All DBs
Position
A10:complement(108000662..108005209)
Genome browser
AA seq
607 aa
AA seq
DB search
MASTFTAMSSVGSFVAPNGLVMDKKLPSSSNRLSSLASISSSSFVSRRNVVLRRSRLPKI
SAAKELHFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAK
EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITR
GIEKTTRALVSELKAISKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEE
GKSAENSLYVVEGMQFDRGYISPYFVTDSEKMAVEYENCKLLLVDKKITNARDLINILEE
AIRSGYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT
VIRDEVGLSLDKASKEVLGHASKVVLTKDTTTIVGDGSTQEAVNKRVVQIKNLIEAAEQD
YEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL
LRLASKVDAIKDSLDNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNPRY
GFNAATGNYEDLMSAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPETVPAGNPM
DNSGYGY
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggcatccactttcacagccatgtcatcagttggctcattcgttgcacctaatggtcta
gtcatggataagaagcttccatcttcttccaacagattgtcatctttagcttccatttct
tcatcttcatttgttagtagacgaaatgttgttcttagaagatctcgtctgcccaagatt
tctgcagcaaaagagctacatttcaataaggacgggtcagccataaagaaattacaaact
ggtgtgaacaagcttgctgatttggttggagtcactcttggaccaaaaggtaggaatgtc
gttctagagagcaaatatggctctcccaaaatcgttaatgatggtgtgacagtggctaag
gaggttgagttggaggacccagttgagaacattggggctaagttagtaagacaggcagct
gctaaaactaatgacttggctggtgatggaacgacgacttccgttgttcttgcgcaaggt
ttgattgctgaaggtgtcaaggtggtggcagccggtgcaaatcctgttttaatcactagg
ggcattgagaagaccacaagggctttagtatctgagcttaaggctatttcaaaagaggtt
gaagacagtgaacttgctgatgttgctgctgttagtgctgggaacaactatgaagtagga
aatatgattgctgaggccatgagtaaagttggccgaaagggtgtagttacccttgaggag
ggaaaaagtgctgagaatagtctatatgttgttgaagggatgcaatttgaccgtggttat
atctcaccttactttgtcactgatagtgagaaaatggcagtagaatatgagaactgcaag
ttgctgctggttgataaaaaaattactaatgcaagggatcttatcaacatcctggaagaa
gccattaggagtggatacccaattttgataattgccgaagacattgaacaggaagcttta
gcaactctggttgtgaacaaacttagaggtgctttgaagattgctgctctcaaagctccc
ggctttggagaacgcaagagtcagtatctggatgacattgctatccttactggaggtact
gttattagagatgaggttgggctttccttggacaaagctagcaaagaagtcttgggtcat
gcctctaaagtggttcttacaaaggatacaaccaccatcgtgggtgatggaagcacccag
gaagcagtgaataaacgagttgtacagattaaaaatctcattgaggctgcagaacaggat
tatgagaaggaaaaacttaacgaaaggattgctaaattatctggtggtgtggcagtgata
caggttggagctcaaactgaaacagagcttaaagaaaagaaattgagagtagaagatgct
cttaatgcaactaaggcagcagttgaggaaggtattgttgtcggtggtggatgtactttg
ctaagacttgcttctaaggtggatgctatcaaggattcactcgataatgatgaagaaaag
gttggagcagatattgttaaacgagctttgagttaccctctaaaattgatagctaaaaat
gctggtgtaaatggaagtgtggtgagtgagaaggtgctctccaacgataaccctaggtat
ggattcaatgctgccactggaaattatgaggatcttatgtctgcaggaattatagatcca
accaaggtggtcagatgttgcttggagcatgctgcatcagtggccaagacattcttgatg
tccgattgtgtggttgtggaaataaaggaacccgagaccgtgcctgctgggaaccccatg
gataattcaggatacggctactaa
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