Gossypium hirsutum (upland cotton): 107896538
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Entry
107896538 CDS
T04793
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107896538
03015 mRNA surveillance pathway
107896538
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107896538
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107896538
5.6.2.5 RNA 5'-3' helicase
107896538
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107896538
mRNA cycle factors
Common to processing body (P body) and stress granule
107896538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
SLFN-g3_helicase
NAT10_TcmA_helicase
nSTAND3
ATPase
NPHP3_N
PhoH
UvrD-helicase
Viral_helicase1
AAA_22
SRP54
Ribosomal_S13_N
AAA_16
AAA_32
AAA
Motif
Other DBs
NCBI-GeneID:
107896538
NCBI-ProteinID:
XP_016677218
UniProt:
A0A1U8ILF9
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All DBs
Position
A09:complement(80126769..80137399)
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AA seq
1258 aa
AA seq
DB search
MESHFETASQPDPATDAYTFLEFNTQLESDFGYTDFRDPICSWPTPYDATAADRSGSDTA
ASSSPSSASKGAARGVNSNNNSSICSRTVVDALANGISGLNFEETAGDEDGGYEYGKADS
VEHSCRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPL
GETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNAFKDMNWDLSQWCPLIDDR
CFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDTSLEDLEKPGIDDEPQPVALKY
EDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKQVAYFVFPKEDNELRL
VPGDELRLRYSGDAARLAWQAVGHVIKLTAQEEVALELRASQGVPIDVSHGFSVDFVWKS
TSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQAF
AVKSVLQKPISLIQGPPGTGKTVTSAAIVYNMANQGQGQVLVCAPSNVAVDQLAEKISAT
GLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQLLKDEQGELSSSDEKKY
KALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGVK
QVVLVGDHCQLGPVIMCKKGARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNS
FYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEK
IVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMLRTGALRQQLYKEIEVASVDSFQGREKD
YIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEH
ECLVEGPLNNLKQSMVQFQKPKKVYNDRRVLFARGPGIVPNDNFASAASSSPNADRRNSR
AQGAYMPPGLPNGTHKPGVQPTRFEMPQVPLPPFPGPPSQPYAIPTHEAVLGPVGAVPQV
PQPGNRGFGAGCGNAGAPISSRLQHQQGTPQNAGTLGSAFNFPPLENPNGQPSMGGQLSQ
PGFVNNMTVQGPNQSLHDGFSSGVMSQDYSGDDFKTQGSHVCYNFADFSTQVSQGGYAAD
YSTQGAQSGFLGNFLNQNSQAGYSRVGTGNDFMSQEYMNRGSRGLFTQVGFSDPSQDDAS
QSHCGVNPNQLQSQGFMNSLYSQPFAQFNKQPLNLQASQQGHGSQTRNFNLMVKNKDA
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atggaatctcatttcgagacggcctcgcaacccgatccagccacagatgcttacacattc
ctcgaattcaacacccaactcgagtccgatttcggctacacggactttcgagacccgatt
tgttcttggccgacaccctacgacgccaccgccgctgatcgctccggctccgacactgct
gcctcctcctctccctctagtgcttcaaaaggcgctgcccgtggcgtaaatagtaataac
aacagcagtatttgtagtaggaccgtggttgatgcgttagctaatgggattagtggattg
aatttcgaggagacagctggggatgaggatggtggttatgagtacggaaaagcggattcc
gtcgagcactcttgtcggtattgtggggtttcaaacccggcttgcgtggttcgctgtaat
gtcccttcgtgtaggaagtggttctgtaattcgagagggaatacatctggctcgcatatt
gttaatcatctcgtacgagctaaacacaaggaagtctgccttcataaggatagtcctttg
ggagaaacaattcttgaatgctacaactgtggatgcagaaatgttttccttcttggtttt
atatctgctaagacagagagcgttgttgttcttctttgtagagaaccttgtttgaatgtt
aatgcttttaaggacatgaattgggacttgagtcagtggtgtccccttattgatgataga
tgctttttgcagtggttagttaaggtcccatctgaacaagaacagctaagggcacggcaa
ataagtgctcagcagataaacaaggtagaagagctttggaagacaaatcctgatacttcc
cttgaagatcttgagaagcctggcatagatgatgaacctcagcctgtggccttgaagtat
gaagatgcttatcagtatcaaaatgtttttgcgccacttattaagcttgaagctgactat
gataaaatgatgaaagaatctcaaagcaaggacaatgtcaccgttcgatgggatattggc
ttaaacaagaaacaagttgcatattttgtttttccaaaggaagacaatgagctgcgtcta
gtacctggtgatgagttgcgactgcgttattcaggagatgctgcccgcctagcatggcag
gctgttgggcatgtgatcaagctaacggcacaagaggaagttgcacttgagctccgtgct
agtcagggagttcctattgatgtcagccatggattcagtgttgattttgtctggaagagt
acaagctttgaccggatgcagggggcaatgaaaacatttgcagttgatgaaacaagtgtt
agtggttatatttaccaccaccttcttggccatgaggttgaggttcaaatggttcgtaat
acactgcctcgacgttttggtgcacctggtctgccagaactgaatgcatctcaagctttt
gctgtaaagagtgttcttcagaagccaataagcctgattcaagggccccctggcactgga
aaaactgttacttctgctgccattgtttataacatggctaatcagggtcagggacaggtt
ctagtctgtgctccaagtaatgtggctgttgaccagctagctgaaaagataagtgccact
gggttaaaggttgtaaggctttgtgcgaaatcaagggaagctgtgagttctcctgttgaa
catttgaccctgcattatcaggttcgacatcttgacacatctgagaaaagtgaacttcac
aagttacaactattgaaagatgaacaaggtgaattgtcaagtagtgatgagaaaaagtac
aaagcactaaagcgagcaacagagagagaaatatcccaaagcgctgatgtcatttgttgc
acttgtgttggggctggagatcctagattggcaaattttaggttccgccaggtacttatt
gatgagtctactcaggcaactgaacctgagtgtctcattcctttagttcttggagtgaag
caggttgttcttgttggtgatcattgccaacttggtcctgttatcatgtgcaagaaagga
gctcgtgctgggctagcacaatctctatttgaacgtctagttttacttggtgttaaacca
attagattacaggtccaataccgtatgcacccatgtttatcagagtttccttctaatagc
ttctatgaaggcacattacaaaatggagtgacaatcaatgaaaggcaatcatcgggcatt
gattttccttggcctgtgcctaatcgtcccatgtttttttatgtacagatgggacaagag
gagattagtgctagtggtacatcatatctcaatcgaactgaggctgcaaatgttgaaaag
attgttaccacattcttgaggagtggtgttgttcctagtcagattggggtcataacaccg
tatgagggacaaagggcatatattgtaaattatatgttaagaactggtgctttgagacag
cagctttacaaagaaattgaggttgcaagtgttgattcgttccaaggacgggaaaaagat
tacatcatcttgtcttgtgtgagaagtaatgaacatcagggtattggatttctaaatgat
ccccgcaggcttaatgttgccttaacacgtgctcgatatggtattgtaattcttggaaac
cccaaagttcttagcaaacaacctctgtggaatggtttattgacacattacaaggaacat
gagtgcctcgttgaaggacccctaaataacttgaagcagagtatggttcaattccaaaag
cccaaaaaggtgtacaacgatcgaagagttctctttgcccgtggacctgggattgtgcct
aatgataattttgcatctgctgcctcatccagtccaaatgcggatagaagaaatagtcgt
gctcagggtgcgtatatgcctcccggtcttcctaatggtactcacaagcctggggttcaa
cctaccaggttcgaaatgccccaggttcctcttccaccatttcctggtcctccttcccaa
ccttatgctattccaactcatgaagctgtacttggacctgtgggagctgttcctcaggtc
ccacaacctggaaaccgaggctttggagctggatgtggtaatgctggtgctccaatcagc
agtcgtctccagcaccagcaaggcacaccacagaatgctggaactcttgggtctgctttt
aacttccctcctctggaaaatccaaacggccagccatctatgggtggtcaattatctcaa
cctggatttgtgaataatatgacagtccaagggccaaaccaatcattacatgatggattt
tcaagcggggtaatgtcccaggactactcgggtgatgacttcaaaacccaaggctcacat
gtttgttataactttgctgatttttctacacaggtttcacagggtgggtatgctgctgat
tattccacacaaggagcacagagtggctttctagggaacttcctaaaccagaattctcaa
gctggatattctcgtgttggcactggaaatgatttcatgtctcaggaatacatgaatcgt
ggatcacgagggctgtttactcaggttggctttagtgacccttcacaggatgatgcatca
cagagccattgtggtgtgaatcccaaccagcttcagtctcagggttttatgaattctctc
tactcccagccctttgctcagttcaacaaacagccactaaacttgcaggcttctcagcag
ggacatggctcccaaaccagaaacttcaatttaatggttaagaataaggatgcatag
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integrated database retrieval system
