Gossypium hirsutum (upland cotton): 107896595
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Entry
107896595 CDS
T04793
Name
(RefSeq) phytochrome B isoform X1
KO
K12121
phytochrome B
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
107896595
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
PAS_4
HisKA
PAS_9
PAS_8
PAS_3
Diguanyl_cycl_sensor
Motif
Other DBs
NCBI-GeneID:
107896595
NCBI-ProteinID:
XP_040935070
UniProt:
A0A1U8IGR3
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Position
A10:101121309..101126926
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AA seq
1142 aa
AA seq
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MSSGSRAVHSHQQRQQQQQQQQQAESSGTTNMRASHTHHQADSISKAIAQYTVDARLHAV
FEQSGESGKSFDYSQSVKTTTQSVPEQQITAYLSKIQRGGHIQPFGCMIAVDEPSFRIIA
YSENAREMLGITPQSVPNLERIEVLTIGTDVRTLFTPSSAVLLEKAFAAREITLLNPVWI
HSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISELQSLPGGD
IKLLCDTVVESVRQLTGYHRVMVYKFHEDEHGEVVAESKRPDLDPYLGLHYPATDIPQAS
RFLFKQNRVRMIVDCHATPVRVVQDDGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLA
MAVIINGNDDEATGGRNTMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFALQLNMELQL
AAQMSEKRVLRTQTLLCDMLLRDSPSGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPS
EAQIKDIVEWLLAFHGDSTGLSTDSLSDAGYPGAASLGDAVCGMAVAYITKRDFLFWFRS
HTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWDNAEMDAIHSLQLILR
DSFKDAEASNSKAVVHAQLGGLELQGVDELSSVAREMVRLIETATAPILAVDVEGRINGW
NAKAAELTGLSVEEAMGKSLVHDLVYEEYQETVDRLLSHALQGEEDKNVEIKMRTFGLED
HKKAIYVVVNACSSKDYMNNIVGVCFVGQDVTGQKVVMDKFIHIQGDYKAIVHSPNPLIP
PIFVSDENTCCLEWNTAMEKLTGWPRGEIIGKMLVGEVFGSCCHLKGPDALTKFMIVLHS
AIGGQEADKFPFAFFDRNGKFVQALLTANKRVNMEGQIVGAFCFLQIATPELQQALRVQR
QQEKKCFARMKELTYICQEIKSPLNGIRFTTSLFESTELTENQKQFIETSVACEKQMLKI
IRDVDLESIEDGSMELEKAEFFLGSVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYG
DQARIQQVLADFLLNMVRYAPTGEGWVEIHVRPSLKQISEGVTIVHTEFRMVCPGEGLPP
ELVQDMFHSSRWMTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLITLELPVPRSGSKN
ED
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaggcagcagagcagttcactcccatcagcaacgccaacagcagcagcagcag
cagcagcaagctgagtcctcaggcacaactaacatgagagcatcccatacccaccaccag
gctgactctataagcaaagccattgctcagtacacagtcgatgctcgcctccacgctgtt
ttcgagcagtcgggggaatcgggtaagtcatttgattactcccagtccgttaaaactact
acccaatcggttcccgagcagcaaatcactgcttacttgtctaaaatccaaagagggggc
cacatccagccatttggctgcatgattgcggttgacgaacccagtttccgtatcatcgcc
tacagcgaaaacgcacgcgagatgcttgggattacccctcaatcagttcccaatttggag
aggatcgaagttctcacaattgggaccgatgttcgaacccttttcactccttccagcgct
gttttgttggaaaaagccttcgccgcccgcgagatcacgttgctgaatccggtttggatt
cactctaagaattctgggaagcccttttacgctattttacataggattgatgttggaatt
gtgattgatttagaacctgctagaactgaggatcctgccttgtctattgctggggctgtc
caatcgcagaaattagctgtccgtgctatttctgagttacagtccctccctggaggcgat
attaagcttttgtgtgacacggttgtggaaagtgtgagacagcttactggatatcatagg
gtaatggtttataaatttcatgaggatgagcatggggaggtcgtggccgagagtaaaagg
cctgacttggacccttacttaggtttacattatccggcaacggatattccccaggcttca
aggtttttgtttaagcagaatagagttaggatgatagtggactgtcatgccacgccagtg
cgtgtggttcaggatgatgggttaatgcaacctctgtgtttggttggatccactcttcgg
gcccctcatggttgccatgctcagtatatggctaacatggggtcaattgcttctttggcg
atggcagttattatcaatggaaatgacgatgaagctactgggggaagaaatacaatgagg
ctttggggtcttgttgtttgtcatcatacttctgcacgttgtattccatttccacttcga
tatgcttgtgagttcctaatgcaagcatttgcacttcaactgaatatggaattgcaattg
gcagctcaaatgtcggagaaacgtgttttgaggactcaaactcttttgtgtgatatgctt
cttcgtgactctccatctggcattgtcacgcaaagtcccagcattatggatcttgtgaaa
tgtgatggggctgccctttattaccaaggtaagtattacccattaggtgtgacgccatct
gaggcccagataaaagatattgtcgagtggttgttggcattccatggagattcgactggt
ttaagcaccgatagtttgtctgatgctggttaccctggggcagcctcacttggggatgca
gtttgtgggatggctgttgcttatattactaaaagggattttctattctggttccggtca
cacacagcaaaagagatcaaatggggtggtgcaaagcatcatccagaggacaaagatgat
ggtcaaagaatgcatccacgatcttcattcaaggcatttttggaagtggtcaagagtcga
agtttgccatgggataatgctgaaatggatgcaattcactcactgcagcttattcttcgt
gactcattcaaggatgctgaagcaagtaattctaaagccgttgtacacgctcagcttggg
ggactagagctacaaggggtggatgagcttagttcagttgcaagggaaatggtgaggtta
atagagactgcaactgctcccatattggccgtagatgttgaaggtcgcattaatgggtgg
aatgcaaaagctgcagaattaacaggactctcagttgaggaagccatggggaagtctttg
gttcatgatcttgtttatgaggaatatcaagaaacggttgacaggcttcttagtcatgct
ttgcaaggtgaagaagataaaaatgtagagataaaaatgaggacttttggcttagaagat
cataaaaaggctatatacgtggtggtgaacgcttgctctagtaaggattatatgaataat
attgttggagtttgctttgttggtcaggatgttacaggccaaaaggtggtgatggacaaa
ttcatccacatacaaggtgattacaaggccattgttcatagtcccaatcctttgattcca
ccaatatttgtttcggatgaaaacacatgttgcttggagtggaacactgccatggaaaag
ctcactgggtggcctcggggggaaatcatagggaaaatgttagttggtgaggtttttggc
agttgctgtcacctcaagggtccagatgctttgacaaaattcatgattgttttacatagt
gcaattggagggcaggaggcagataagttcccttttgccttctttgaccgcaatgggaaa
tttgttcaggcactgttgacagcaaacaaaagggtgaatatggaaggccagattgtagga
gcgttttgtttcctgcagattgcaactccagagttgcagcaagcactgagagtccagagg
caacaggagaaaaaatgctttgctagaatgaaagagttaacctacatttgccaggaaata
aaaagtcctttgaatgggatccgttttactacctcactttttgaatctacagagctgact
gaaaaccaaaagcaatttattgagactagtgttgcttgtgagaagcaaatgttgaagatc
ataagagatgttgatttggagagcattgaggatggttctatggagcttgaaaaggctgaa
tttttccttgggagtgtcataaatgctgttgttagccaagtaatgctactgctgagggaa
agaaatctacagttaattcgggatataccagaggagatcaaaacattggctgtttatggc
gatcaagcaagaattcaacaggtgttggctgattttttgttgaatatggttcgttatgca
ccaactggtgaaggttgggtagagattcatgttcgtccatctttgaaacaaatatccgaa
ggagtcaccattgttcatacagaattcaggatggtatgccccggtgaaggccttcctcct
gagttggttcaagacatgttccatagcagtcgatggatgacacaggagggcttagggttg
agcatgtgccggaaaatcttaaagctcatgaatggtgaggtccaatatatcagagagtcg
gaaagatgttatttcttaattactctagaacttcctgtacctcggagtggctcaaaaaat
gaagactag
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