Gossypium hirsutum (upland cotton): 107896835
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Entry
107896835 CDS
T04793
Name
(RefSeq) WD repeat-containing protein PCN isoform X1
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
107896835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ghi03009
]
107896835
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
107896835
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40
Beta-prop_EML_2
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
WD40_Prp19
WDR55
Beta-prop_HPS5
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR36-Utp21_2nd
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_SPT8
EIF3I
Beta-prop_CAF1B_HIR1
WD40_Gbeta
PQQ_2
Motif
Other DBs
NCBI-GeneID:
107896835
NCBI-ProteinID:
XP_016677613
UniProt:
A0A1U8IMI7
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All DBs
Position
A10:complement(88040699..88046526)
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AA seq
833 aa
AA seq
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MLPKAYRTSSIDWKPSPVVALATSPDDSQVAAAREDGSLEIWLVSPGSVGWHKQLTIHGD
STCRVSSLVWCCVGSKGPSPGRLFSSSIDGSVSEWDLFDLKQKIVLESIGVSIWQMAVAP
INRLPTHEETRSQNFGNGYLNDKYECNDTDDDENCESGDVSDSEQVYQKLVMEDRRVAIA
CDDGAVRMYTISDLDKLIYQKSLPRVSGRALSVTWSHDSNRIYSGSSNGLIRCWNADLGH
EIFRSVVGLGGLGSGPELCVWSLLSLRCGTVVSADSTGSVQFWNGDNGTLLQAHSTHKGD
VNALAASPRQTRVFSAGSDGQVILYKLSSEMLQSGNDKSSYEMLKKWVFVGSVRAHTHDV
RALTMAVPICSEGSLSDEAKDLQDEKRKKVKRIRTREKKPLDFSYGKWAHFGVPMLVSAG
DDAKLFAYSAMEFTRFSPHDICPAPQRVPIQLVTGSRFNQTSFLFVQASCWLDVLSVNAP
DVGSGPYGGQVTTNIVARVKSKAGRKIICSAMSNSGEFFGYSDIIRPSLFELRRQAGKST
WAISKRQLPQKLPSAHSMVFTSDGSRLLIAGHDRRIYVVDLDSSKLLHTFIPCRQEHEKE
GPPGEPPITKMFTSSDDQWLAAINCFGDIYLFNLEILRQHWFISRLDGASVTAGGFPPQR
NNVLIITTSSNQFYIFDVEARQLGEWSMQHSFTLPRRYQEFPGEVIGFSFCPSSSSHPSK
STSLVVYSARAMCSIDFGKAVDEDDESQLVHEALLKLQGSITNKKLKYLLIDGRQTESKH
TSRKNNFEIIGFRDPVLFIGHLSKNSILMVDKPWMEVVKSFDTAPVQRHIYGT
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgctccccaaagcttaccgaaccagctcaatcgactggaagccgtctccggttgtcgcc
cttgctaccagccccgacgactctcaggttgcggccgctcgtgaggatggctccctcgag
atttggcttgtctctccaggctctgttggctggcataagcagctgactattcatggggat
tctacttgtcgagtttcctcgctggtgtggtgttgcgttggttcaaaaggcccgtctcct
ggcaggttgttctcctcgagtattgatggctcagtctcggaatgggatcttttcgacttg
aagcagaagattgtgctagagtcaattggagtttcaatctggcagatggctgtggcaccg
attaatagactgccaactcatgaagagactaggtctcagaattttggaaatggttatttg
aatgataaatatgaatgcaatgatactgatgatgatgaaaactgtgaaagtggagatgtt
tcagactcagaacaagtttatcagaaactagttatggaagatagacgtgtagcaattgct
tgtgatgatggagctgtgcgaatgtacactatttctgatcttgataagttaatctaccaa
aaatcattgcctagggttagtggacgtgctctaagtgtgacctggagtcatgactcaaac
aggatatattcagggagtagcaatgggttaattagatgctggaatgctgatttgggtcat
gaaattttcagaagtgtagtaggtcttggaggtttgggaagtgggcctgagctttgtgta
tggtcattactttctttgaggtgcggaactgttgttagtgcagacagcaccggatctgtt
cagttctggaatggtgataatgggactcttcttcaggcacattccacccacaaaggtgat
gtgaatgccttggcagcatctccaaggcagaccagggtgttttctgctgggtctgatgga
caggttattctttataagctttccagtgagatgcttcagtctggtaatgacaaatcttct
tatgaaatgttgaagaaatgggtgtttgttggttctgtaagggctcatacccatgatgtc
agagccttgacaatggcagtgcctatatgttctgaaggttctttatctgatgaggcaaaa
gacttgcaagacgaaaagaggaaaaaagtaaaaagaattcgaactcgggagaagaagccc
ctcgattttagttatggtaaatgggctcattttggagttcccatgcttgtctctgctggt
gatgatgcgaagctatttgcctactctgctatggagttcactagattctccccacatgat
atttgccctgcacctcagagagttccaatacaacttgtcactggctcaaggttcaaccaa
acttcttttctctttgttcaggcttcttgttggttagatgtactctctgttaatgctcct
gatgtgggttctggcccatatggtggtcaggtgaccactaatatagtagctcgggttaag
agtaaggcaggtcgaaaaatcatttgcagtgcaatgtctaactcaggggagttttttggt
tattctgatatcattagacctagtctatttgaactacgtaggcaagctggcaaaagtaca
tgggccattagtaaaaggcaacttcctcaaaaacttccatccgcacattctatggttttt
acctctgatgggtcacggttgctgatagcagggcatgatagaaggatctatgttgtggat
ttggacagctcgaaactactgcataccttcattccttgtcgtcaggagcatgagaaggaa
ggaccccctggtgagcctcccataacaaaaatgttcacaagttctgatgaccagtggtta
gctgctatcaactgcttcggagatatatatttattcaatctggagatactaaggcaacac
tggtttatatcaagattggatggtgcctctgttactgccggtggctttcctcctcagaga
aataacgtgcttattatcacaacttcctcaaaccaattctatatatttgatgtggaagct
agacagttgggagaatggtcgatgcagcattcattcactcttcctagaagataccaagaa
tttcctggggaggttattgggttctctttctgcccttcatcatcctcccatccatcaaaa
tcgacatctcttgttgtttacagtgcaagggcaatgtgttcaattgactttggaaaggca
gtagatgaagatgatgaaagtcagttggtacatgaagcattgttgaagcttcaaggctct
atcaccaataagaaattgaaatatttgttgatagatggtcgtcaaacagagtcaaaacat
actagtagaaaaaataattttgagataattggttttagagacccagttttatttattgga
cacctttctaaaaattccatcttgatggtagacaaaccatggatggaagtagttaaatct
tttgatactgccccagttcagagacatatatatgggacataa
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