Gossypium hirsutum (upland cotton): 107897079
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Entry
107897079 CDS
T04793
Name
(RefSeq) RNA polymerase sigma factor sigC isoform X1
KO
K03093
RNA polymerase sigma-I factor
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107897079
Transcription machinery [BR:
ghi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
107897079
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
Motif
Other DBs
NCBI-GeneID:
107897079
NCBI-ProteinID:
XP_016677905
UniProt:
A0A1U8III0
LinkDB
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Position
A06:31985681..31991023
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AA seq
569 aa
AA seq
DB search
MGFRLNLKGVFPVPSHFLPNYSPSRLPSSSSSSVRGKEASFNSTRLSLISDEGVFLSKDP
PKAYASPAALQTLENGCSDIEEKVNIDKGPQSQNCSHVMVGKSHEPIRGNRSSSCASPQT
CKASRYNVLMDNLHVLEETFVDSDVLRLEREILVQLGRLGALNLFNIFLSHKPSNIFDLS
DDAANSLECIMNGLVDSEKDKIIVSSRKNKQRRKRREKAVETTTISTQLPPTNTLHGRYQ
KPKRSSPKRMSDSRKRRSAVARNEVEMSKGVKVVANLERIRATLEEETGRIVSLSCWAEA
AKLTEKVLQQHLHYGWYCRDELIRSTRSLVLYFARNYRGLGIAHEDLIQAALSYCMGPLT
YHAGSIGVLQGAERFDHTRGYKFSTYIQYWIRKSISRMVARHARGIQVPCTLSRAIVQIQ
KARKALSKSHGKYPEEDEIAKITGLSLSKIRLANKCFRVVGSIDQKIGDYINAKYLEFIP
DASICSPEKTVMRQHMKEDINDLLNGLEKRERQVMVLRYGLTGSPPKSLEEIGRLFRVSK
EWIRRIEMKAMAKLRDKETCRNLSHYLDS
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgggttttagattgaatctcaaaggtgttttcccagttccttctcattttcttcccaat
tattcaccttccaggcttccttcttcttcttcttcttcagttagagggaaggaggcttct
tttaactcaaccaggctgtctttaatatctgatgaaggtgtgtttctatcaaaagatcct
ccaaaagcatatgcttcacctgcagctctgcaaacattagaaaatggttgctcagatatt
gaagaaaaggtaaatattgacaagggaccacagtcacagaattgttcccatgttatggtt
ggtaaatcgcatgaaccaattagaggaaacagatcttcctcgtgcgcaagcccacagaca
tgcaaggcatcacgttataacgtgcttatggataatctccacgttttggaggagacattt
gttgattcagatgtgttaagattggagagggaaatcctagtacaactaggaaggcttgga
gctctaaatttattcaatatctttctgtctcataaaccttcaaatattttcgacctatct
gacgatgctgctaatagtttagagtgtattatgaatggtttggtggatagtgaaaaggac
aagataattgttagctctagaaaaaataaacaacgaagaaaaagaagagaaaaagcagta
gaaactactacaatttctacacagttgccgcctaccaacaccctacatggacgttatcaa
aagcccaaacgttcttctcctaaaagaatgtcagactctagaaagagaagatcggcagtt
gctaggaatgaagtagaaatgtcaaagggtgttaaggtggttgcaaacttggagaggatt
agagcaactttggaagaggaaaccgggagaattgtcagcttgagttgctgggcagaagca
gccaaacttactgagaaggtgctgcaacagcatttgcattatggttggtactgcagggat
gagttaataaggagtacacgctccttagtcctctactttgcaaggaactataggggtttg
ggaatagcccacgaagacttaatccaggcagcactatcttattgtatgggacctttgaca
tatcatgcgggaagtataggagtcctccaaggtgcagaaaggtttgaccacacaagggga
tacaaattttctacctatatacagtactggataaggaaatcaatttcgagaatggtggca
cggcatgctagagggattcaagttccctgcacgttaagcagggcgatagtacagatacag
aaagctaggaaggcccttagcaaaagccatgggaaatacccagaagaggacgaaattgcc
aagattacgggtctttctttgtccaaaatcaggttggctaataaatgcttcagagttgtg
ggttcaattgaccagaaaattggagattatatcaatgcaaaatatttggaatttattcca
gatgcatcaatatgtagcccggagaaaactgtgatgaggcagcacatgaaggaagatatc
aatgatcttttgaatggtctggaaaaaagagagaggcaagtgatggttctacgctacgga
ctcacgggttctcccccgaagtcactcgaggagattgggaggcttttccgtgtgagcaaa
gagtggataagaaggatagagatgaaagcaatggcaaaattgagggataaagaaacctgc
agaaatttaagccactatttggactcttag
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