Gossypium hirsutum (upland cotton): 107897098
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Entry
107897098 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein NUP85-like
KO
K14304
nuclear pore complex protein Nup85
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107897098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107897098
03036 Chromosome and associated proteins [BR:
ghi03036
]
107897098
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
107897098
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
107897098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleopor_Nup85
Motif
Other DBs
NCBI-GeneID:
107897098
NCBI-ProteinID:
XP_016677927
UniProt:
A0A1U8IIF8
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Position
A06:32676949..32681612
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AA seq
715 aa
AA seq
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MPGVSSDSARGALVPLSPESPGAVVYPLRHGLKSPISRLSISWSRGNSLRVSVFAAPSSD
GSVNDGDGGKVVEVKLGGGDGEISEAHWRRIAYGSVSPFALLQSRKNAVSSLSKMSMNSS
PYDGDWWDYIMEYSKDINALLVNQKSASVPVLDDTKSVITKGEEPTSLKAAWELLEMFYA
EKPSHSWLPERLVDWLADYDSLFSGTHPTVHSKLVDFQKEFVNLQVVEDDPKYWEVMSSA
LAVGWLNIVVKMLRLHGSYQLDQLSNRETENGLVEAVAVLISKMPRMRLEQEAGKLGECY
KAKPDFVKAWEKWRGQINKLDSSAFWFQCAHQQTREGLRSMLQIMLGNANSLCSATYNWI
ELYISHFLYMRPLTVGLESMYSLAQKSIQLKPMASAHRLMGLIIGILGENTEVVLAECLK
GFGPWMVAHAIELLTAGSDHAEMLLHEERXELGGISIEELHRLVYAQVLSSFPLTWQIAP
IYLISCMKHGMILLQILLSKQPVQDNQLLLKSIEICRLYELHSVTSNIMKIAGVHHWKHG
RKGSGVFWLQQARDEYRLNRIALQLFDSVGKTISDESFKQWEGLIQLLGSDSKTAGGLEF
LHKYRDFKKSLRQIHDGKATDPARQAVESLISLMKNPSTPQRFWLPLLYDSLKLLNWKER
PLLNVSQTNLLLNKLQELSMARLRPDFIESELPPQALNSVRLALGTNLGRAILEE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgcccggcgtctcttctgattccgcccgcggcgctttggttccactttcacccgagtcc
ccgggcgcggtggtgtatcctctccgccatggtctcaagtctccaatctctagactctcc
atctcatggtcacgcggtaactccctccgagtctcggttttcgccgctccttcttccgat
ggctccgtcaatgatggtgacggaggaaaagtagtggaagtgaagctcggcggcggagac
ggcgagatcagcgaggctcattggcggaggatcgcctacggttcggtctctccttttgct
ctactccaaagcaggaaaaatgctgtctccagcttgtccaaaatgtccatgaattcttca
ccttacgatggtgactggtgggattacataatggagtacagcaaggacataaatgccctt
ctagttaatcagaaatcggcttcagttccggttctcgatgacacgaagtcagtcataact
aaaggagaggaaccaactagtttgaaggctgcgtgggagctattggaaatgttttatgca
gaaaagccatctcattcatggttacccgaacgccttgttgattggttagctgattacgat
agccttttctctggaacacacccgacagtccactcaaagcttgttgattttcaaaaagaa
tttgttaacttgcaggttgtggaggatgatcccaaatattgggaagttatgtcatctgca
cttgctgttggttggctgaatatcgtagttaaaatgttgcgcttgcacggttcttatcaa
ttagatcaactcagcaatcgtgagacagagaatggtcttgtggaggcagttgccgttctt
atttcaaaaatgccacgcatgcgtttggaacaagaagctgggaaattgggtgaatgctat
aaggccaagcctgattttgtaaaggcatgggagaaatggcggggtcagataaataagctg
gattctagtgcattctggtttcagtgtgctcaccagcagactcgggagggcttgagaagt
atgttacaaataatgctgggtaatgctaatagtctctgctctgcaacatataactggata
gagctgtatatttctcacttcctatacatgaggccattaacagtggggttagaaagcatg
tacagcttggcacagaaaagcattcaattgaaaccaatggcttctgcacataggttgatg
gggcttataattggaattcttggggaaaatactgaggttgtattagcagaatgcttgaaa
ggatttggtccttggatggttgcgcatgccatagagttgttgactgctgggagtgaccat
gcagaaatgcttttacatgaagagcgtncagaacttgggggaataagcatagaggagctt
catcgacttgtttatgctcaagtcctatcttcatttccattaacttggcaaattgctcca
atttatcttatatcatgcatgaagcacgggatgattctgttacagatattattgtccaag
caacctgttcaagataatcagttattgctgaagagcatagagatttgccgcctttatgaa
ctccatagtgtaacttcaaatattatgaagattgctggagtacaccactggaagcatggt
cggaaaggttctggagtcttttggcttcagcaagctcgggatgaatatcgtcttaatagg
atagctctgcaattgtttgattcagttggaaaaacaatctctgatgagagtttcaagcaa
tgggaaggtttaattcagttattgggttcagattctaagactgctggtggactagagttc
ctacacaaatacagagatttcaagaaatctcttcggcagattcatgacggaaaggctaca
gatcctgctcggcaagctgtggaatctctcatatcacttatgaaaaacccttctacgcct
caacgcttttggctgccacttctttatgattcgttgaagctgcttaattggaaggaacgt
cctttgttgaatgtgtctcagacaaatcttctattaaataaactacaagaattgtccatg
gcaaggcttcggccggactttattgaatctgagttaccaccccaggccttgaactctgtt
agactagctcttggcacgaatcttggacgtgcaatcctagaggaatga
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