Gossypium hirsutum (upland cotton): 107897340
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Entry
107897340 CDS
T04793
Name
(RefSeq) nuclear pore complex protein NUP96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107897340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107897340
03036 Chromosome and associated proteins [BR:
ghi03036
]
107897340
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
107897340
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
107897340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Motif
Other DBs
NCBI-GeneID:
107897340
NCBI-ProteinID:
XP_016678266
UniProt:
A0A1U8IJK5
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All DBs
Position
A10:complement(10496226..10504153)
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AA seq
1062 aa
AA seq
DB search
MPSVAGTLCEIHSTASEISRRGTDVNTENSDLHVTLYKKRKISAISDFFPHVMRRIEESL
PSLHSPDYYMEPCLEDMVRMERLEPGYCSRVPDFVVGRSGYGCVKFFGKTDVRGLDLDQI
VKFHRHEVIVYEDESNKPMVGQGLNKTAEVTLKLQIENLGLEKQEVDSIVKKLRQSMRSQ
GAHFIAFDPANGEWKFLVDHFSRFGLSEDDEEDIIMDDATGAIQDPGVMNGGGNPEIDED
MQLDTNGPLLSHSLPAHLGLDPVKMREMRMLMFPVEEEEDIEDFRGTGSNQKQAFAKEYI
RSSLHNSSQRMPNRTSPSVVRKTPVALLEYNSGTFDSSSSGTVLMTQENKGLPLKTTKRE
GFKLDIKQETPVTGSHSHNIVDAALFMGRSFRVGWGPSGILVHSGAPVGSNDGQRVLSSV
INVEKVAIDKVVRDENSKVKKELVDFAFDAPLNLHKALNYEEKEVDVGSFQLKLLKVVSN
RLELSGICRSYIDIIERQLEVPGLSSSARLVLMHQVMVWELIKVLFSERENTGQLKSMAA
DNEEDMMQDIKEGPPEVDLEALPLIRRAEFSCWLQESVCHRVQEEVSSVNDSGYLEHLFF
LLTGRQLDAAVELAASKGDVRLACLLSQAGGPTVNRSDVSRQLDIWRINGLDFNFIEKDR
IRLYELLAGNIHGALHGIKIDWKRFLGLLMWYHLPSDTALPVVFRTYQHLLDDGKAPFPV
PIYIDEGPVEENANLSRVERFDLSYYLMLLHASEESQLCSLKAMFSTFSSTHDPLDYHMI
WHQRAILEAVGAFHSNDLQSLDMGLVSQLLCQEQCHWAIYVALHMPYRDDYPYLQAALIR
EILFQYCETWSSQESQRRFIEELGIPLQWLHEAMAVYYNYHGDLPRALEHFLECENWQKA
HSIFMTSVAHELFLSAKDSEVWRIATSMENHKSEIENWDLGAGIYISFYVLRSSFQDDNN
TMAELGSLDSKNAACRDFLGCLNESSAVWGGRLHVDARVAYSKMADEVCNLLLSDTSGSR
THDEQLSCYYTVFSAPIPEDLHSSHLQDAVAVFTFQLSEVLS
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgccttcagttgcagggactttgtgtgaaattcatagcacagcaagtgaaatttctaga
agggggacagacgtcaatacagaaaattctgatttacatgttacattatacaagaagaga
aagatatctgcaatttctgattttttcccacatgttatgagaaggatagaggaatcttta
cccagtttacattcccctgattattatatggagccttgcttggaagatatggtaagaatg
gaacgcttggaacctggttattgcagccgtgttccggattttgtggttgggagatctggt
tatgggtgtgtaaaattttttgggaaaactgatgttagagggttggatttagatcaaatt
gtgaaattccataggcatgaggtaattgtatatgaagatgaaagcaataagcccatggtt
ggtcaaggccttaacaaaactgccgaggtaactttgaaacttcagattgaaaatttaggc
ttggaaaagcaggaagtagatagtattgttaagaaattaagacagagtatgcggagtcaa
ggggcacacttcattgcatttgaccctgctaatggtgaatggaaattcttggttgaccat
tttagcagattcgggttgagtgaagatgacgaggaagatattataatggatgacgcaaca
ggggctatacaagatcctggggtaatgaatggtggtgggaatcctgagattgatgaagat
atgcaactggatactaatggaccactgctttctcattctcttcctgcccatcttgggctg
gaccctgttaagatgagagaaatgaggatgttgatgtttcctgttgaggaagaagaggac
attgaggattttagaggaacaggttctaatcagaagcaggcctttgctaaagaatatata
aggtcctctttgcataactctagccagaggatgcccaataggactagcccatctgttgta
cggaaaaccccagttgctttgcttgagtacaactctggtacttttgattcaagctcatct
ggaactgttctgatgacacaagaaaataagggtttgccactgaagacaacaaaaagggaa
ggtttcaagttggacatcaaacaagagacacctgtcactggaagccattctcacaatata
gttgatgcagcattgttcatgggtaggtcatttcgtgtaggttgggggccaagtggcatt
cttgtgcactctggtgcacctgtaggtagtaatgatggccaaagagtattatcttctgta
atcaatgtagaaaaagtggcaattgataaggtagttagagatgaaaatagcaaagtaaag
aaagaacttgttgactttgcttttgatgctccattgaatcttcataaagctctaaattat
gaagaaaaagaagtggatgttgggtcctttcagctgaagcttctgaaggttgtttctaat
cgcttagagctttctggcatttgtaggagctatatagacattattgagaggcagttggag
gttcctggtttatcttcttctgctcgcttggttttgatgcatcaagtgatggtgtgggaa
ttgattaaagttcttttctcagagagggaaaatactggtcaactgaaatctatggctgct
gataatgaggaagatatgatgcaagatatcaaggaaggtcctccagaagtagacctggaa
gcacttcctcttattaggagagccgagtttagttgttggctgcaagaaagtgtatgtcac
cgtgtacaagaagaagtaagctctgtgaacgattcaggttacttggaacacttattcttt
ctcttgactgggcgacaacttgatgcagctgtggagctggcagcttctaaaggagatgtt
agattggcttgtttactaagccaggctggtggaccaacagttaatcgttctgatgtttca
agacagcttgatatttggagaattaatggtctggacttcaatttcatcgagaaggacagg
attcggctttatgagttgcttgctggcaatattcatggtgctttgcatggtattaagatt
gactggaagagattcctaggattgttaatgtggtatcacctaccttcagatactgctttg
cctgttgtgtttcgaacttatcagcaccttcttgatgatggaaaagctccgtttcctgtt
ccaatttatattgatgaaggaccagttgaagagaatgcaaatttgagcagagtggaaaga
tttgatctttcatactatcttatgcttctgcatgccagtgaagagagtcaactatgttct
ctgaaggcaatgtttagcaccttctcttcaacacatgatccccttgactaccatatgatc
tggcatcagcgagcaatcttggaagctgttggtgctttccattctaatgatcttcaatca
cttgacatgggacttgtatcccagttactatgtcaggagcagtgtcactgggctatctat
gtagcccttcacatgccctaccgtgatgattatccttaccttcaagctgctcttattagg
gaaattctgttccaatattgtgaaacttggagttcacaagaatcacagcgccgatttatt
gaggaattgggtattcctttgcagtggttgcatgaagctatggcagtttattacaattac
catggggatttgccaagggctcttgagcactttctggaatgtgaaaattggcaaaaggct
cattctattttcatgacttcagttgctcatgaattgttcttgtctgccaaggactcagag
gtatggaggattgccacatccatggagaaccacaagtctgaaattgaaaattgggatttg
ggagctggaatatatatttcattctatgtgctaagaagttcattccaggacgataacaat
actatggctgaacttggttccctcgacagcaaaaatgctgcttgtagagactttcttggc
tgtttgaatgagtcctcagcagtttggggtggcaggttacatgttgatgctagggtagca
tattcaaagatggcggatgaggtatgcaatttgttgctttcagatacaagcggaagtcga
acgcatgatgaacagttaagctgctattatacggtgttcagtgctcccattccggaagac
cttcattcgagtcatttacaggatgcagttgcagttttcactttccagctttcagaagtg
ttgagctaa
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integrated database retrieval system
