Gossypium hirsutum (upland cotton): 107897390
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Entry
107897390 CDS
T04793
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107897390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107897390
03009 Ribosome biogenesis [BR:
ghi03009
]
107897390
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107897390
Spliceosome [BR:
ghi03041
]
Complex A
U1 snRNP components
U1 related factors
107897390
Complex B
107897390
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
Pre-60S particles
Helicases
107897390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
107897390
NCBI-ProteinID:
XP_016678330
UniProt:
A0A1U8IJQ5
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All DBs
Position
A10:6920842..6927070
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AA seq
509 aa
AA seq
DB search
MSRYDSRSGDPASYRDRRSDSGFGGASAYGGSGRSLSSRKDYDAGEPPRKLDLDGLTPFE
KNFYVESPSVAAMSEMEVEEYRQKREITVEGRDVPKPVKSFADVGFPDYVLQEVMKAGFV
EPTAIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAP
TRELAVQIQQEAAKFGASSRIKNTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLDSH
HTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLY
NPYKVIIGSADLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQI
TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD
FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIAILKEAGQKVSPELAAMGRG
APPPPSGHGGFRDRDRDRGKGYGGSRPWN
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgagtagatatgatagccgctccggcgatcctgcctcctaccgtgaccgtagaagtgac
tcagggtttggtggggcttcagcatatggtggttcagggcggtccttgtcaagcagaaag
gactatgatgctggtgaaccacctaggaagttggatttggatggcttgacaccatttgaa
aagaatttttatgttgaatctccttctgtggcagcaatgtctgagatggaggtggaggaa
tatcggcagaagagggaaattacggttgaaggtcgtgatgttccaaagcctgtgaagagt
tttgctgatgtgggatttccagactatgtactgcaagaagtcatgaaagcagggtttgtt
gaaccaacagccatacaagctcaaggctggccaatggctttaaagggccgtgatcttatt
ggtattgctgaaacaggatcagggaagacccttgcctatttattgcctgcaattgttcac
gtcaacgcacaaccaattttagctcctggagatggtccaattgtattagtattagctccc
acacgtgaacttgcagttcaaatacaacaggaggctgctaagtttggtgcgtcatcaagg
atcaagaatacatgcatatatggtggggttccaaagggacctcaagtgcgtgatctccag
aaaggtgttgagattgttattgctacaccaggaaggttaatagatatgttggattcacat
cacacaaatctgcgaagagttacttatttagtcttggatgaggcagatcggatgttagac
atggggtttgagcctcagatacgaaaaattgtttctcagatacgtcctgatcgtcaaact
ttatactggagtgcaacttggccaaaggaggttgaacaattggcaaggcagtttctttac
aatccgtacaaagtgataattggatctgcggatttaaaagctaaccatgcaattcgccaa
catgttgacattgtttcggagagtcagaaatataacaaattggtgaagctgctggaggat
atcatggatggcagcagaattttgattttcatggataccaagaaaggctgtgaccaaatc
actaggcaacttcgcatggatggttggccggctctctcaattcatggagataaaagtcaa
gcagaaagggattgggtcctttcagagtttaaagctggcaagagccctataatgactgca
acagatgttgcagctcgtggcttagatgtgaaagatgtcaaatatgtaatcaattatgac
ttcccgggttctcttgaggattatgttcatcgcattggtcgaactggaagggcgggggca
aaaggaactgcctacactttcttcacagctgcaaatgccagatttgcaaaagaacttatt
gccatacttaaggaagctggacaaaaggtcagtcctgaattggcagcaatgggacgtggt
gcacctcctcccccatcaggacatggtggtttccgagaccgagaccgagaccgagggaag
ggttatgggggcagccgcccttggaattga
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