Gossypium hirsutum (upland cotton): 107897679
Help
Entry
107897679 CDS
T04793
Name
(RefSeq) DNA mismatch repair protein MSH2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
107897679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107897679
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
107897679
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
Motif
Other DBs
NCBI-GeneID:
107897679
NCBI-ProteinID:
XP_016678695
UniProt:
A0A1U8IKP3
LinkDB
All DBs
Position
D09:24178629..24186923
Genome browser
AA seq
948 aa
AA seq
DB search
MDENFDEQNKLPELKLDAKQAQGFLSFFKTLPNDPRAVRFFDRRDYYTAHGENATFIAKT
YYRTTTALRQLGSGSNGLSSVSVNKNMFETITRDLLLERTDHTLELYEGSGSNWRLMKSA
SPGNLSSFEDVLFANNEMQDTPVVVALLPNFRENGCTVGFSYVDLTKRILGLVEFLDDSH
FTNVESALVALGCKECLLPLESGKSSECRTLSDALTRCGVMVTERKKTEFKARDLVQDLG
RLVKGSIEPVRDLVSGFEFAPAALGALLSYAELLADEGNYGNYSICRYNLGSFMRLDSAA
MRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLLDISEINSRLDLVQAF
VEDTELRQDLRQHLRRISDIERLMRNIQRTRAGLQHIVKLYQSSIRVPHIKSALEKYDGQ
FSSLIKERYLDPFELLTDDDHLNKFIALVETSVDLDQLENGEYMISPSYDDALATLKSEQ
ESLERQIHNLHKQTAFDLDLPVDKALKLDKGTQFGHVFRITKKEEPKVRKKLSTQFIVLE
TRKDGVKFTNTKLKKLGDQYQKVLEEYKNCQKELVNRVVQTTATFSEVFEHLAGFLSELD
VLLSFADLASSCPTPYTRPRITPPDVGDIVLEGSRHPCVEAQDWVNFIPNDCRLVRGKSW
FLIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCEKASISVRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATENSLVIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATH
FHELTALAHENGNYELQKKQIVGVANYHVSAHIDSSSRKLTMLYKGGLSEMVEPGSCDQS
FGIHVAEFANFPESVVALAREKAAELEDFSPTSIISTDAGQEEGSKRKRGYDADDISRGA
AKAHKFLKEFAELPLETMDLKQALQQVTKLKDDLQKDVNNSEWLQQFF
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaattttgatgaacaaaacaagcttccagagctcaaactagacgctaagcag
gctcaagggtttctctcatttttcaaaactctaccgaatgatccaagggctgttcggttt
tttgatcgccgggattattatactgctcatggtgaaaatgcaacctttatcgcaaaaacg
tattatcgtactactactgctctccggcaactcggtagtggttcgaatggcctttcaagt
gtaagtgttaataaaaacatgtttgaaacaatcacccgtgatcttctcctggagagaaca
gaccacactctggagctctatgaaggtagtggctccaattggaggttgatgaaaagtgcc
agtcctgggaatctgagcagttttgaagatgttctctttgccaacaatgagatgcaggat
acacctgttgttgtcgcactgcttcctaacttccgtgaaaatggttgcactgttggattt
agttatgttgatttaacaaagagaatacttggtttggttgagtttcttgatgatagtcac
tttactaatgtggagtcagctttggttgctcttggttgtaaggagtgccttttgcccttg
gagagtggaaaatccagtgaatgtagaactctgagtgatgctttgaccagatgtggtgtt
atggtaactgagagaaagaaaactgaatttaaagcaagggatctggtgcaggatcttggt
aggctagtcaaaggctccattgaaccagttcgagacttggtttctgggtttgaatttgca
ccagctgctttaggagccttactttcttatgcagaattactagcagatgaaggaaattat
ggaaactatagcatttgtagatacaatctgggcagcttcatgaggttagattctgctgca
atgagggcattgaatgtcctagaaagcaaaactgatgcaaacaaaaattttagtttgttt
ggtcttatgaatagaacctgcactgctgggatgggtaagcggttgcttcatatgtggcta
aaacagcctttgttagatataagtgagataaattcaaggctagatttggtacaggctttt
gtggaggatactgagcttcgccaagatttgagacagcatctaagaagaatttcagatatt
gaacgacttatgcgcaatattcaaaggacaagagctggtttgcagcatattgtaaaactt
tatcagtcaagtataagagttccccacattaaaagtgccctggaaaaatatgatggacag
ttttcttccttgatcaaggaaagatatttggatccttttgagctcttgactgatgatgat
catttgaacaagtttattgctcttgttgagacttctgtcgatctagatcaacttgaaaat
ggggaatacatgatttcacctagttatgatgatgcactagctacactaaaaagtgagcag
gagtcactagagcgccaaatacacaatttacataaacaaactgcttttgatcttgatctg
ccggtagacaaggcattaaagttagataagggcacacagtttggacatgttttcagaatt
acaaagaaagaagagcccaaagtaaggaaaaagctctccacccaatttattgtccttgaa
acccgaaaggatggagtgaaattcactaacacaaagcttaaaaagttgggggaccagtac
caaaaggtacttgaggagtataagaattgtcaaaaagagctagtaaatcgagtggttcaa
actacagcaactttctctgaggtatttgagcacttagctgggtttctctctgaattggat
gtcctacttagttttgcagatttagcttcaagttgtcctaccccatacacaagacccaga
attactccaccagatgtgggggatattgttttagaaggaagtagacatccttgtgtggag
gctcaggactgggttaattttataccaaatgattgtagacttgtaagaggcaagagctgg
ttcctgatcatcactggacctaatatgggtggaaaatcaacattcatccgccaggttggt
gttaacattctaatggcacaagtaggctgttttgttccttgtgaaaaagctagcatttct
gttcgagattgtatttttgcccgtgttggtgctggtgactgccaactacgtggagtttct
acctttatgcaagaaatgcttgaaactgcatcaatattgaaaggagctactgagaattca
ttggtgatcatcgatgagttggggcgaggaacatcaacctatgatggatttggtttagca
tgggccatatgtgagcatattgttgaagtgattaaagcacctacactgtttgctacccac
ttccatgaactgactgctttagctcatgaaaatggcaattatgagttgcagaaaaaacag
atcgttggtgtggcaaactatcatgttagtgctcacattgactcatcaagtcggaaattg
acaatgctgtacaaaggtgggttatcagaaatggttgagccagggtcatgtgatcaaagt
tttggtattcatgtggcagaatttgccaattttcctgaaagtgttgttgctcttgcaaga
gaaaaggctgctgaattggaagatttctcaccgacttcaatcatttcaactgatgctgga
caagaggagggttcaaaaaggaagagagggtatgatgctgatgacatatctaggggtgct
gcaaaggctcacaagtttttaaaggagtttgctgagctgccattggagaccatggacctg
aaacaggctctgcaacaagtaaccaagctaaaggatgacttacaaaaagatgtaaacaac
tctgagtggcttcagcaattcttctag
DBGET
integrated database retrieval system
