Gossypium hirsutum (upland cotton): 107897688
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Entry
107897688 CDS
T04793
Name
(RefSeq) E3 ubiquitin-protein ligase SINAT5-like
KO
K04506
E3 ubiquitin-protein ligase SIAH1 [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107897688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107897688
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107897688
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
SINA (Seven in absentia) proteins
107897688
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sina_TRAF
Sina_ZnF
Sina_RING
PHD_4
DUF7567
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
107897688
NCBI-ProteinID:
XP_016678710
UniProt:
A0A1U8NFC0
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Position
A08:61129934..61132649
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AA seq
339 aa
AA seq
DB search
MEFDNIECVSTTDGMNEDEIHHHNLQHPHPHHAHHQFSSSKPHNATNTTNNGNTTTNNIV
GPTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTICSTCKTRVQHRCPTCRQELGDIR
CLALEKVAESLEMPCKYYNLGCPEIFPYYSKLKHEAMCNYRPYNCPYAGSECSVVGDIPF
LVGHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMA
PVYMAFLRFMGDETEARNYSYSLEVGANGRKLIFEGTPRSIRDSHRKVRDSHDGLIIQRN
MALFFSGGDRKELKLRVTGKVWKEQQNPDTGVCIPNLCS
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atggagttcgataacattgagtgtgtgtcaactacagatggaatgaatgaggatgagatc
catcaccataacctgcaacatcctcaccctcatcatgctcaccatcaattttcatcgtcc
aagcctcacaatgccaccaacaccaccaacaatgggaataccaccaccaacaacattgtg
ggtcctacggctatcgctcctgctaccagcgtccatgaattgttagaatgtcctgtttgt
accaattctatgtacccaccaatccatcagtgccacaatggccatacaatttgttctacc
tgtaaaacaagagtacaacatcggtgccccacttgtagacaggaactcggtgatatcaga
tgtttagcattggagaaagtggcagaatcccttgagatgccttgcaaatactacaacttg
ggatgcccagaaatatttccctattacagcaaactcaaacatgaggcaatgtgcaactac
agaccatacaattgtccctatgctggatcagaatgttctgttgtcggggatattcctttc
ctggttggccatctgcgggatgaccacaaggtggacatgcatactggctgcacatttaac
catcgctatgttaagtccaaccctcgggaagtagagaatgctacctggatgctaacagtc
ttccattgctttggtcagtatttttgtcttcactttgaagctttccagcttggcatggcc
cctgtctacatggcatttctccgtttcatgggtgatgaaacagaggctaggaactatagc
tatagccttgaggttggagcaaatggccgaaaacttatatttgaaggcaccccacgtagc
atccgtgatagtcaccggaaagtcagggacagtcatgatggtctaattatccaacgtaac
atggcacttttcttctctggtggggataggaaggagctgaagctgagggttacagggaag
gtatggaaggaacaacaaaatccagatactggtgtatgcataccaaacttatgcagctga
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