Gossypium hirsutum (upland cotton): 107897699
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Entry
107897699 CDS
T04793
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107897699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107897699
03009 Ribosome biogenesis [BR:
ghi03009
]
107897699
04131 Membrane trafficking [BR:
ghi04131
]
107897699
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ghi04147
]
107897699
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
107897699
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
107897699
Membrane trafficking [BR:
ghi04131
]
SNARE
SNARE associated proteins
Others
107897699
Autophagy
Aggrephagy
Other aggrephagy associated proteins
107897699
Exosome [BR:
ghi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
107897699
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_5
AAA_22
AAA_33
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_17
AAA_28
Mg_chelatase
ATPase_2
AAA_18
Parvo_NS1
IstB_IS21
ABC_tran
Viral_helicase1
NACHT
AAA_7
AAA_lid_PRS2_C
NB-ARC
AAA_24
TsaE
DUF815
Zeta_toxin
Sigma54_activat
Vps4_C
Sigma54_activ_2
Zot
Phage_Mu_Gp48
Motif
Other DBs
NCBI-GeneID:
107897699
NCBI-ProteinID:
XP_016678724
UniProt:
A0A1U8IS21
LinkDB
All DBs
Position
A01:complement(62529721..62534843)
Genome browser
AA seq
805 aa
AA seq
DB search
MSNQAESSDSKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVSLHSDTMEKLQLFRGD
TILIKGKKRKDTICIALADDTCDEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCV
VAPDTEIFCEGEPVRREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEEVDLERIAKDTHGYVGADLAALCT
EAALQCIREKMDVIDLEDESIDAEILNSMAVSNDHFQTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRHQI
FKACLRKSPIAKDVDVRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSEN
PEAMEEDVEDEVAEIKPAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFAE
TGSRTAASDPFAASAGGADEDDLYS
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaccaagccgaatcctccgactcgaaggggactaagagggattttagtacggca
atcttggaaagaaagaaggctccgaatcgactcgttgtcgatgaggcaatcaacgatgat
aactccgttgtttctcttcattctgataccatggaaaaactccagctgtttcgcggtgac
actatcctgatcaaggggaagaagaggaaggatactatctgcattgctcttgcagacgat
acatgtgatgaaccaaagatcaggatgaacaaggttgtcaggtcaaacttgagggttagg
cttggtgatgttgtctccgtgcaccagtgtcctgatgttaagtatggaaaacgtgtgcac
atattgcctgtagatgacacaattgaaggggttactggaaatctctttgatgcttacctg
aaaccttactttcttgaagcataccggccagtgaggaagggtgatctcttccttgttaga
ggtggaatgagaagtgtagaattcaaagttatcgaaactgatcctccagagtactgtgtt
gtcgcaccagacactgagatattctgtgagggagagcctgtcaggagagaggatgagaat
agattagatgaggtaggttatgatgatgttggtggagtgagaaaacagatggctcagatc
cgggaactagtggagcttccattgaggcatccacagctcttcaaatcgattggtgtgaag
ccacctaaaggaattttgctttatggacctcctgggtctggaaagactttgattgctcgt
gctgttgcaaatgaaactggtgctttctttttctgcatcaatggtccggagataatgtca
aaattggctggagagagtgagagcaatctcaggaaagcatttgaggaagcagaaaagaat
gcaccatctattatatttattgatgaaattgactcaattgcacccaagcgtgagaagacc
catggtgaagttgaaaggaggattgtttctcagctattaacattaatggatgggcttaaa
tcccgtgcacatgttattgttattggagccacaaatcgtcccaatagcattgatccagct
ctcagaaggtttggaagatttgatagggagattgatattggcgttcctgatgaagtcggc
cgtcttgaggttcttcgtatccacacgaagaatatgaagttggctgaagaggttgattta
gaaagaattgccaaggacacccatggttatgttggtgctgatcttgcagcactttgtact
gaggcagcattacagtgcatcagggaaaagatggatgtgattgacttggaagatgagtcg
atagatgcagagatactcaactctatggcagtctcaaatgaccacttccagactgctctt
ggaacaagcaatccgtcagcgctgcgcgaaactgttgttgaagtgcctaatgtcagttgg
gaagatattggtggccttgagaatgttaaaagagagcttcaagagactgttcaatatcct
gtggagcatcctgagaagtttgagaagtttgggatgtcaccttcaaagggagtactattt
tatggccctccaggatgtggtaaaacacttttggctaaagctattgccaatgaatgtcag
gcaaacttcattagtgtcaagggacctgaattgcttacaatgtggtttggtgagagtgag
gctaatgtacgtgaaatttttgacaaggcacgccagtccgcaccttgtgtcctcttcttt
gatgaacttgattccattgctacccagagaggaagcagtgtaggtgatgcagggggggca
gctgatagagttttgaaccaacttcttaccgagatggatggcatgtctgccaagaaaaca
gttttcatcattggagctaccaaccgacctgacattatagatccagcacttcttcgtcca
ggtcgtcttgatcagttgatctatattcctctccctgatgaggagtcacgccatcaaatc
ttcaaggcctgtttgaggaagtcaccgattgcaaaagatgttgatgtcagagctcttgcc
aaatatactcaaggctttagtggggcagacattacggaaatttgtcaacgtgcatgcaaa
tatgctataagagaaaacattgaaaaggatatcgagagagaaaggaggaggagtgagaat
cctgaagccatggaagaagatgttgaagatgaagttgcagaaatcaagcctgcacatttt
gaagaatcgatgaagtttgctcgtaggagtgtgagtgatgcggatatccgcaagtaccag
gcatttgcacaaacattgcagcaatcaaggggatttggaagtgaatttaggtttgctgaa
actggttcaaggactgcagcatctgatccttttgcagcttctgctggtggagctgatgaa
gatgacctttacagttaa
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integrated database retrieval system
