Gossypium hirsutum (upland cotton): 107897847
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Entry
107897847 CDS
T04793
Name
(RefSeq) transcription initiation factor IIE subunit alpha
KO
K03136
transcription initiation factor TFIIE subunit alpha
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107897847
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107897847
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIE
107897847
Prokaryotic type
Archaeal type
TFE
107897847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIE_alpha
wHTH-PRTase_assc
Zn_ribbon_SprT
Dimerisation
Zn_ribbon_8
Motif
Other DBs
NCBI-GeneID:
107897847
NCBI-ProteinID:
XP_016678918
UniProt:
A0A1U8IR69
LinkDB
All DBs
Position
A11:20331626..20340787
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AA seq
472 aa
AA seq
DB search
MSIEPFNRLVKLAARGFYDDVTTKGDNQPKTGRGDNRGIAVVVLDALTRRQWVREEDLAK
ELKLHSKQLRRILRLFEEEKLVTRDHRRETAKGAKIYSAAVAATADTQMGGKEGEEKIKL
HTHSYCCLDYAQIYDVVRYRMHRMKKKIKDELEDKNTVQEYVCPGCGKRYNALDALRLVS
LEDEYFHCERCNGELVAESDKLAAQDVGDGDDNARRRRREKLKDMLQKMEVQLKPLMEQL
NRVKDMPIPEFGSLQAWEARASAAGRAVNGDSGSNDPSKNSQGYGGTPMPFLGETKVEVA
FSGLDGKEDVKSESASTSLKVLPPWMIKQGMNLTKEQRGEVKQESKPDGSSAQPEFSDDK
KSTVENDDKKKIQDEYLKAYYAALYKKQQELEEAAKKQQELSDIPLATGLSDSSNRQVGM
KAKRDDNEGEDDIDWEEAPVAGNTIESYKVNDLNVEAEESGDDEDDVDWEEG
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcgagccatttaacaggttggttaaacttgctgctcgggggttttatgatgac
gtgacaacaaaaggagacaatcagccaaagacgggtcgaggggataatagagggattgct
gttgtagttcttgatgctcttacaaggagacaatgggttagggaagaagatttggcaaag
gagttgaaactccattcaaagcaacttcggcggattttacggctatttgaggaagaaaaa
ttagttacccgtgatcatagaagagagacggctaaaggggcaaagatttatagtgctgca
gttgctgcgacggctgatactcaaatgggtgggaaagagggagaggagaagattaaattg
cacactcactcttactgttgtctagattatgcacagatatatgatgttgttaggtataga
atgcatcgtatgaagaaaaaaataaaggatgaacttgaggacaagaatactgttcaggag
tatgtctgccctggctgtgggaaaagatacaatgctttggatgcattgagattagtttct
ttggaggatgaatattttcactgtgaaagatgtaatggagaattggtggcagagagtgac
aagttagccgcgcaagatgtaggagatggagatgacaatgcacgacgacggcggcgtgaa
aagttgaaggacatgcttcagaaaatggaggtacagcttaaaccattaatggaacaactc
aacagagtaaaagatatgcctattccagaatttggaagtctccaagcgtgggaagctcga
gcaagtgctgctgggcgtgctgtaaatggtgattctggttctaatgatccttccaaaaat
tctcagggttatggtggcacacctatgccatttcttggggagacaaaggttgaagttgcc
ttttctggtcttgatggcaaggaagatgtcaagtctgaaagtgctagcacatccctgaaa
gttttgccaccttggatgataaagcaaggtatgaacctgacgaaggaacaacgtggagag
gtcaagcaagagtcaaagccagatggcagctcagcacaaccagaattttcagatgacaaa
aagtccactgttgaaaatgatgataagaagaagatacaggacgagtatcttaaagcttat
tatgctgctttgtataagaaacaacaagaactagaagaagctgctaagaaacaacaagaa
ttatcagacattcctctagccactggtctttctgactcttccaatcgtcaagttggtatg
aaagctaaacgtgatgacaatgagggagaagatgatattgattgggaagaagctcctgtt
gctggcaatacaattgagagttataaggtcaatgatttgaatgtggaagcagaagaatct
ggagatgatgaggatgatgtagattgggaggaaggctga
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