Gossypium hirsutum (upland cotton): 107898378
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Entry
107898378 CDS
T04793
Name
(RefSeq) nuclear poly(A) polymerase 1-like isoform X1
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107898378
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107898378
Enzymes [BR:
ghi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
107898378
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
107898378
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
Motif
Other DBs
NCBI-GeneID:
107898378
NCBI-ProteinID:
XP_040932871
UniProt:
A0A1U8IPS8
LinkDB
All DBs
Position
A09:77979676..77992160
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AA seq
793 aa
AA seq
DB search
MGSPGLGTGNSGQRLGITEPISLGGPTEYDVIKARELEKYLQNVGLYESQEEAVSREEVL
GRLDQIVKNWVKAISRAKGLNEQLVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHAT
REEDFFGELHKMLSEMPEVSELHPVPDAHVPIMKFKFKGVSIDLLYAKLSLWVIPEDLDI
SQDSILQNTDDQTVRSLNGCRVTDQILRLVPNIQVVATTLYSVHYICFFPPEILDFDYVL
LLDLQNFRTTLRCMRFWAKRRGVYSNVAGFLGGINWALLVARICQLYPNALPNMLVSRFF
RVYTQWRWPNPVMLCAIKEGSLGLQVWDPRKNPKDRYHLMPIITPAYPSMNSSYNVSSST
LRIMTDEFQRGSEICEAMEANKADWDALFEAYAFFEAYKNYLQIDISAENDDDLRNWKGW
VESRLRQLTLKIERHTYNMLQCHPHPGDFQDNSRPFHCSYFMGLQRKQGVPVNEGEQFDI
RLTVEEFKHSVNTYTLWKPGMEIHVSHVKRRSIPSFVFPGGVRPSRPSKATWDSRRASDA
KVSGHAGSDKSGEVKGAADGQVDGKKRKRADDNADTQLKNSKYITAVPSSSAEVQVGSPG
GTVTPCSLKGDNVDATGLVEPTRGKDESNMTNGSKNSSTEELSSLNSEVDGSLRYIPPHK
GLHVTTDASSSKEAEKLAIEQIMSGPYVSDQAFPEEPEELEDDLEFRNQVVSVGNTNNGS
QQAPVSDAAGAAPIISSNGAGPSISLHASGSIEELEPAELTAMTSIPVAPVVQKKPLIRL
NFTSLGKASEKSW
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atggggagtcctggattgggaactggaaacagtgggcaaaggttaggcatcacggaacct
atttcgttgggaggaccgactgaatatgatgtgatcaaagcccgagagcttgagaagtat
ttgcaaaatgtgggattgtacgagagtcaagaggaggctgttagtcgagaggaagtattg
gggaggcttgatcagattgtgaagaattgggttaaggcaattagccgtgctaaaggtttg
aatgagcaattggttcaagaagcaaatgctaagatattcacttttggttcttatcggcta
ggggtacatggtcctggtgcagatatagataccctttgtgtgggacctagacatgcgaca
cgagaagaggatttctttggtgaactacacaagatgctatcagagatgcctgaagtgtcg
gaattgcaccctgtgcctgatgctcatgtcccgatcatgaaattcaaattcaaaggagtt
tccatagatcttctctatgcaaaactttcactttgggttattcctgaagacttggatatt
tcgcaagattctatattacaaaatacagatgaccagacagttcgtagtcttaatggttgc
agagtcactgaccaaattttacggttggttccaaatattcaggttgtggctaccacttta
tatagtgtgcactacatatgtttttttcctccagagattctggactttgattatgttctg
ttacttgatctgcagaacttccgtacaactttgagatgcatgagattttgggcaaaacgt
cgtggtgtttattctaatgttgctggttttcttggtggtataaactgggctttgcttgtt
gctcgtatatgtcagctataccctaatgctttgcccaatatgttagtttctcgatttttt
agggtgtatacccagtggcgatggccaaaccctgtcatgctttgtgcaatcaaggaagga
tctcttggtcttcaagtttgggatcctcgaaaaaatcctaaagatagatatcatttgatg
ccaataattactcctgcttatccttctatgaactctagctacaacgtgtcatcaagtact
ttgcgaatcatgacagatgaatttcagaggggtagtgaaatttgtgaggctatggaggca
aacaaagctgactgggatgccctttttgaggcttatgccttctttgaagcatacaagaat
tatctacaaatagatatctctgctgaaaatgatgatgatttaagaaattggaaaggctgg
gttgagtcccgtctccgtcaactcacattgaagattgaaaggcacacatataacatgctt
caatgccacccacatcctggcgattttcaagacaattctaggcccttccattgcagttac
tttatgggcttgcaacgcaaacaaggagttccagtaaatgaaggcgaacaatttgatata
aggttaactgtcgaggagtttaaacactctgttaatacgtacactttatggaagcctgga
atggaaatccatgtatctcatgtaaaacgtaggagcatacctagctttgtatttcctggt
ggtgtccgtccttcccgtccatctaaagcaacctgggatagtaggagggcatcagatgca
aaagtttctggtcatgctggttcagacaagtctggtgaagttaaaggagctgcagatgga
caggttgatggaaagaagaggaagagggcagatgacaatgcagatactcaattgaaaaac
agcaaatatatcactgctgtgccttcttctagtgcagaagttcaggtgggtagtcctggg
ggtactgtgactccttgttccttgaagggtgacaatgtagatgcaacaggattggttgaa
ccaacaaggggaaaagatgagagcaatatgacaaatggctcaaaaaattcaagtacggaa
gaactttcttcccttaacagtgaggttgatggatcacttagatatattcctccacataag
ggtttgcatgtgaccactgatgcatcaagctctaaagaggcagagaagttggctattgag
cagataatgtctggtccatatgtctccgaccaagcttttccagaggaacctgaagagctt
gaagatgatttagaatttaggaaccaggttgtatctgtggggaacactaacaatggctct
cagcaggctccagtgtcagatgcagcaggagctgcaccgataatatcaagcaatggagct
ggtccttccatcagtttacatgctagtgggagtatagaggagttagagcctgcggaactt
actgcaatgacatcaatccctgttgcacctgtggtccagaagaagccgctaataagattg
aacttcacgtccttgggtaaggcttcggagaaaagttggtaa
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