Gossypium hirsutum (upland cotton): 107898574
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Entry
107898574 CDS
T04793
Name
(RefSeq) coatomer subunit alpha-1
KO
K05236
coatomer subunit alpha
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107898574
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ghi04147
]
107898574
Membrane trafficking [BR:
ghi04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
107898574
Exosome [BR:
ghi04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
107898574
Exosomal proteins of bladder cancer cells
107898574
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
TPR_COPA_B
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_SCAP
NBCH_WD40
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
WD_LRWD1
Fis1_TPR_C
Beta-prop_RIG_2nd
Aa-Ago_N
Motif
Other DBs
NCBI-GeneID:
107898574
NCBI-ProteinID:
XP_016679568
UniProt:
A0A1U8IT14
LinkDB
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Position
D04:55221973..55230186
Genome browser
AA seq
1216 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHTKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
MSQPLFVSGGDDYKIKVWNYKLHRCVFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGSLNKKTASPADDILR
FSQMNSELFGGVDAVVKYVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE
VDTFRGHMNNVSCVLFHSKLDIIVSNSEDKSIRVWDVTKRTGLQTFRREHDRFWILAVHP
EMNVLAAGHDSGMIVFKLERERPAFAVSGESLFYAKDRFLRCYDFSTQREAQVIPIRRPG
SASLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPKDSFGRGEMQEAKKGLGSSAIFV
ARNRFAALDKGNNQVLIKNLKNEVVKKSGLPVPTDAIFYAGTGNLLCRSEDRVVIFDLQQ
RLVLGDLQTPLVKYVVWSNDTENVALLSKHTIVITNKKLVHRCTLHETIRVKSGAWDDNG
IFIYSTLNHIKYCLPNGDCGIIRTLEVPIYITKVSGNTIFCLDRDGKNKAIVIDATEYIF
KLSLLRKRYDQVMSMIRNSQLCGEAMIAYLQQKGFPEVALHFVKDEKTRFNLALESGNIQ
IAVASAKEIDDKDRWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLINGNLEKLSKM
LKIAEVKNDVMGQFHNALYLGDIKERVKILENAGHLPLAYVTASVHGLQDVADRLAAELG
DDVLPLPTGKEPSLLMPPTPVVSGSDWPLLRVMKGIFEGGLDSIGRGGVDEEEGAEGDWG
EDLDVVDVDGLQNGDVAAVLEDGEVAEENEEEGGWDLEDLELPPEVETPRVSNNARSSVF
VAPTPGMPVSQIWTQRSSLAADHAAAGNFDTAMRLLSRQLGIRNFAPLKSMFLDLHAGSH
SYLRALSSAPVVSLAIERGWSESGSPNVRSPPALVFNFSQLDEKLKAGYKATTAGKFTEA
LRLFLSILHTIPFIVVESRREVDEVKELIIIAKEYVLGMQMELKRREMKDNPVRQQELAA
YFTHCNLQLPHLRLALLNAMTVCYKAKNLATAANFARRLLETNPTNENQAKTARQVLQAA
ERNMTDASQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCTARFVPSQGGQLCTVCDLAV
VGADASGLLCSPSQVR
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgaagtttgagacgaagagcaatcgagtgaaaggactgagtttccacactaag
aggccttggatcttagccagtctacacagtggtgtgatccaattatgggactatcgaatg
gggactttgattgatcgattcgacgaacatgacggccctgttcgcggtgtccatttccac
atgtctcaacctttgtttgtctctggaggggatgactacaagataaaggtctggaactac
aagttgcatagatgtgtttttacccttcttggacatcttgactatattcgaactgtgcag
tttcatcatgagaatccttggattgtgagtgccagtgatgatcagactatccgcatatgg
aactggcagtcgcgaacttgtatctctgtgttaactggtcataatcattatgttatgtgt
gcatcattccatcctaaagaggaccttgtcgtgtcggcctcccttgatcagactgttcga
gtttgggatattggttccttgaataagaaaactgcctctccagcagatgatattttacgt
ttcagtcagatgaactcagaactttttggtggcgttgatgcagttgttaaatatgtgttg
gaaggtcatgacagaggagtaaattgggctgcatttcatcccaccttacctttgatagtc
tctggagcagatgatcgccaagtgaaattatggcgtatgaatgagacaaaggcttgggaa
gtggatacctttagaggacacatgaataacgtatcatgtgttttgttccattccaaatta
gacatcattgtatctaattccgaggataaaagtattcgtgtgtgggatgtaacaaagaga
actggacttcaaactttccgtcgagaacatgacaggttctggattcttgctgttcatcct
gagatgaatgttttggcagctggacatgacagtggcatgattgtatttaagctagagaga
gagcgtccagcttttgcagtgagtggggaatctctgttttatgccaaggatcggttttta
aggtgttatgacttttcaactcaaagagaggcacaagttattccaattcgacggcctggt
tccgcaagtctgaatcaaagtccaagaactctttcctacagtcctactgaaaatgctgtt
cttatctgctcagatgtggatggaggatcttatgaattgtatgtgataccaaaagatagc
tttggcaggggagagatgcaggaggcaaagaaaggtcttggtagttctgctatatttgta
gctcgtaaccggtttgctgctcttgacaaaggcaacaatcaagtcttgatcaagaattta
aagaatgaggtggttaaaaagagtggccttccagtgcctacagatgcaatattttatgct
ggaacaggtaacttgttgtgtcgatcagaggatagagtagttatatttgatctccagcag
aggcttgttcttggtgatcttcaaacccctttggtgaaatatgttgtttggtctaatgac
acggagaatgttgctttactcagcaagcatacgattgtcataactaacaagaagcttgtt
caccggtgcactcttcatgagacaatacgtgtaaagagtggagcctgggatgacaatggt
atttttatctactccaccctcaaccatataaaatactgcctcccgaatggagattgtgga
ataattcgaacgcttgaggttccaatatacataacaaaggtttctggaaatactatattt
tgcttggatcgtgatgggaagaataaggctatagtcattgatgctactgaatacattttc
aagctctctctgcttcggaagagatatgatcaggttatgagtatgataaggaactctcag
ctatgtggtgaagccatgattgcttatctgcaacagaaagggtttcctgaggtggctctc
cattttgtgaaagatgagaaaacacgctttaatttggctctcgagagtgggaacattcaa
attgctgttgcatcagctaaggagatcgatgacaaagatcgttggtatagattgggtgtg
gaggcccttcgccaaggcaatgcaggtatagtggaatatgcctaccagaggacaaagaac
tttgagaggctgtcttttctttatctcataaatggtaacctagaaaagctgtccaagatg
ctgaaaattgcggaagttaagaatgatgttatgggtcaatttcacaatgctttgtatctt
ggcgatataaaggaacgtgttaagatcttggagaatgctggtcacttgcctcttgcttat
gttacagcgtcagtccatgggctacaggatgtggctgataggttagcagctgagttgggt
gatgatgtccttcctttgccaacagggaaggaaccgtccttattgatgcctccaaccccc
gttgtgtctggtagtgattggcctcttttgagagttatgaaaggcatattcgaaggtgga
ttggatagtattggcaggggtggtgtggatgaagaggagggtgcagaaggtgattggggt
gaggatcttgatgtggtcgatgttgatggcttgcaaaatggggatgttgctgcagttctg
gaagatggggaagtggctgaagaaaatgaagaggagggtggatgggaccttgaagacttg
gaactccctcctgaggttgagacaccaagggtttctaacaatgctcgttcatctgttttt
gtggcaccaactcctggtatgcctgtgagtcaaatttggactcaaagatcatctcttgct
gctgatcatgcagcagcaggcaattttgatacagcaatgcgtttgctgagcaggcaactt
ggaataagaaattttgctcctttgaaatccatgtttcttgatcttcatgctggcagccat
agctatcttcgtgcactttcatctgctcctgtggtgtcattggcaattgagagggggtgg
agtgagtctggtagtcctaatgtgaggtctccaccggccctcgtgttcaatttttctcag
ttggatgaaaagctgaaggctggttacaaggcaacaacggctggaaaattcaccgaggct
cttcggctctttctcagcattcttcatacgattccatttattgttgtggaatcaaggagg
gaagttgatgaagtcaaggagttaattattatcgctaaggagtacgttcttggtatgcag
atggagcttaagcgaagagaaatgaaagacaatccagtccggcaacaggagcttgctgcc
tacttcacccactgcaaccttcaattgcctcacctaagacttgctctgttaaatgcaatg
accgtctgctacaaggcaaagaacctggctacagcagctaactttgccagacgtctacta
gaaacaaaccccacaaatgagaatcaagctaagaccgcgaggcaagtgctacaagctgct
gagaggaatatgactgatgcctctcaactaaactatgatttcagaaacccattcgtgaca
tgtggggcaacttatgtgccaatttacagaggacagaaggatgtatcatgcccatattgc
accgctcgctttgtacctagtcagggtggacaattgtgtacggtgtgtgatcttgcagtg
gtcggggcagatgcttcagggttgctttgttcgccttcacaggtacgataa
DBGET
integrated database retrieval system
