Gossypium hirsutum (upland cotton): 107898593
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Entry
107898593 CDS
T04793
Name
(RefSeq) SWI/SNF complex subunit SWI3D isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107898593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107898593
03036 Chromosome and associated proteins [BR:
ghi03036
]
107898593
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
107898593
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
107898593
PBAF complex
107898593
GBAF(ncBAF) complex
107898593
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
107898593
NCBI-ProteinID:
XP_016679585
UniProt:
A0A1U8IN75
LinkDB
All DBs
Position
D04:54959342..54964930
Genome browser
AA seq
1014 aa
AA seq
DB search
MEEKRRDAVNSPAEPELASTRRRGGALKRKVNSLSGSSSSSTPSKRVTREKSNLISHSPV
NHYGPLTRARQGAPSGNLALGSSSGSGGAKLEETNLVKQSVKAEDLEELKASEELEALEA
KIEADFEAIRSRDSNAHVVPNHCGWFSWTKIHHLEESILPSFFNGKSPNRTPDAYKEIRN
WIVKKFHANPSKQIELKDLEDLEVGDLDARQEVLEFLDYWGLINFHPFPPAGSAVPNPNG
DGDGDGMTEKDSLLENLFHFDEIESRPQVVTKPNLSSPSLPSGLLPESAVAEDLMNPEGP
SVEYHCNSCSADCSRKRYHCQKQADFDLCTDCFNNGTFGSGMSSSDFILMEPADPGLSSS
KWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIADVFFNCDDNNIDTN
SKETAGPAAMNDETTVPKDVSETTESKTTQEDQAQTMPMETSKPEDEKEVRGSEEPSETK
TGTDAKGVKETLKPEDMNVPKDGLEATENCALTAIREAFEAVGYNLTSESKLSFADVGNP
VMALAGFFAHLVGPNIAAASSQSSLKSLSGTCPNIQLAARNCFVLEDPPDEKEPTCSRSV
ANDTGNRGAQNVKHSEDESLKGDQKSSLSHHGDENTEVSLREENATSPSPNDLTTDKKES
SNFATNEEDKKANLNESSIINQSKDHQPSVTRVSNNLTSQVLPSSLEETDGKETAKEPSQ
PPKAVKEVDMSGSVQLKKNEPCDAAASKPVGELSEPANASENLETASCSPSRSKNEQKTV
KPISDGESTEPADASDDVQLLSVSQPSERSEPPQPVTSNSVNENGVTTDKIEEGKSKNHD
STEREDNSSIDKLKRAAVTALSAAAVKAKLLADQEEDQIRQLTTSLIEKQLHKMEAKLSF
FNEMEGVVMRVKEQLDRSRQRLYHERTQIIAARLGLPASSSRAMPPPNAANRVATNFANS
VARPPMSMKAPRPPLSRPMGSMTPTPSNPYVSNTVAGSSIRPGSQDNLSSVGTK
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaaacgccgggatgcggttaactccccggcggaaccggagctggcatcaact
cgccgtcggggtggagcgctgaagagaaaagttaattcgctttccgggtctagttcttca
tcaactccgtcgaaacgggttactcgggagaagtcaaacttgatctcccactctcccgtt
aaccattacggtccgttaaccagggctcgccaaggggcccctagtggaaacctagccttg
ggttcgagttcgggatcgggtggcgcaaagcttgaggagacgaatttggtgaaacaaagt
gtaaaggcggaagatttggaagaattaaaggcaagtgaagagttggaggctttggaagct
aagattgaggctgattttgaggctattaggtctcgtgatagtaatgcgcatgttgttcct
aatcattgcggatggttttcatggacaaaaattcaccatctggaagagagtatcttgcct
tctttctttaatgggaaatccccaaatcgtacccctgatgcatacaaggagattcgcaat
tggattgtgaagaaatttcatgcaaatccaagcaagcagattgagttgaaagatctggaa
gatcttgaagtcggtgacttggatgcaaggcaggaggtattggagttcctggactactgg
ggtttgattaattttcatccattccctccagctggttctgctgtgcctaatcccaatggg
gatggggatggagatgggatgacagaaaaggattctttgcttgaaaatttgtttcacttt
gatgaaattgaatcacgcccacaagttgttaccaagcctaacctttcaagcccatctcta
ccatctgggctacttccagaatctgcggtcgctgaggacttgatgaatccggaggggcca
tctgttgagtaccattgcaactcttgttcagctgattgctctaggaaacgctaccattgc
cagaagcaggcagattttgacttatgtactgattgctttaacaatgggacattcggttct
ggcatgtcttcatcggattttattctcatggaacctgctgaccctggtcttagtagcagc
aagtggacagatcaggaaacccttctccttcttgaggcacttgaactttataaagaaaac
tggaatgagattgcagagcatgttgctacgaaaacaaaagcacaatgcatactgcatttc
gttcaaatgccaattgcggatgtattttttaattgtgatgataataacatagacacgaat
tcaaaagaaactgctggcccagctgccatgaatgatgaaacaactgtccctaaagatgtc
tcggaaacaacagagagtaagactactcaagaagatcaggcccagactatgccgatggaa
acttcaaaacctgaagatgaaaaagaagtcaggggtagtgaggaaccatcagaaaccaaa
actggaactgatgcaaaaggtgttaaagaaacattaaagccagaagatatgaatgtacca
aaagatggactagaagcaactgaaaattgtgcccttacagcaataagggaggcatttgaa
gctgtcggttataatttaacatccgaaagcaaactttcatttgctgatgtaggaaatcct
gtcatggcattggcaggattctttgcacatctggttggacccaacattgctgctgcttca
tcccagagttcacttaaatcattatctggtacttgtccgaacattcaactggctgccagg
aactgctttgttttggaagatccaccagatgagaaggaaccaacatgttctaggagtgtt
gccaatgatacgggtaatcggggtgctcagaatgtgaaacactcggaagacgaaagcctc
aagggggatcagaaaagttcattgagccaccatggtgacgaaaacactgaagtctctctt
cgtgaagagaatgcgacatcgccttcacccaatgacctaaccacggataaaaaagagtca
agcaattttgccactaatgaggaagataaaaaagctaatttgaatgaatccagcattatt
aatcaatcaaaggatcatcaaccaagtgtaacaagggtatcaaataacttaacatcccag
gttctaccaagttctctagaggagacagatgggaaggaaacagctaaagaaccttctcag
cctccaaaagcagtgaaggaagtagatatgtctggttctgttcaactgaaaaagaatgag
ccttgtgatgccgctgcatcaaagccagtgggagagctatctgaaccagcaaatgcatca
gaaaatctagagacagcttcctgctctccatccagatcaaagaatgagcaaaaaactgtt
aaaccaatctctgatggggaatctacggagcctgcagatgcatcagatgatgttcaactg
ttgtctgtttcacaaccatctgaaaggagtgaacctccacagccagtcacatcgaattca
gtaaatgaaaatggagtaacgacagacaagatcgaagaaggtaaaagcaagaaccatgac
tctacagagagagaagataatagtagcattgataaattaaagagagctgcagttacagca
ctctcagcagcagcagtgaaggcaaaacttctagcagaccaggaagaggaccaaatccga
caacttaccacatcattaatagaaaagcagttacataagatggaagccaaattatctttc
ttcaatgagatggagggagtcgtaatgagggtgaaggagcaattggacaggtcaaggcaa
aggctttaccatgagcgaacgcagataattgctgctcgactgggcttaccagcttcctcc
tctagagcaatgccgccaccaaatgctgcaaatagagttgcaacaaactttgcaaactcg
gttgcaaggcctccaatgagcatgaaagccccaagaccaccattgtcgagacccatgggt
tctatgacccctaccccttccaacccatatgtatccaatacagttgcagggagttcaatt
cgacctggtagccaagacaatctttcctccgttggaaccaagtag
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