Gossypium hirsutum (upland cotton): 107898638
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Entry
107898638 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: eukaryotic translation initiation factor 5B
KO
K03243
translation initiation factor 5B
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
ghi03012
]
107898638
Translation factors [BR:
ghi03012
]
Eukaryotic type
Initiation factors
eIF-5
107898638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
IF-2
GTP_EFTU_D4
GTP_EFTU_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
107898638
NCBI-ProteinID:
XP_040946983
UniProt:
A0ABM2ZWH2
LinkDB
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Position
D04:56953569..56961316
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AA seq
1361 aa
AA seq
DB search
MAGGSAFDALADDDDRMEVNDEDVVAKALKGKKKKSKGGKKGGNRFAAAALDEFDEDFSE
KVDEMKAKEEDVPSISFSDKKKKSKSTKKSGKAIGGSAFDAIAAEDDDGEVVDDGGDVSK
EESKVEVDDDDGDDLIAKAFAGKKKSKGGKKGGGSRFTATVLDELGDEGGLKEDVEDDVP
VFPSSDKKKKSKSARKVGNPFSAAALDEVESDSELKEDEEDDVASFSFSDKKKKSKSKSS
KKSGNSFSAALLDDEDEGDASVSESTGAAAIDDYDDDTSMVAFSGKKKKSSKKKSSAAFA
AFGDEAGQQSEVSDMVETELSSLGTSNVEAVDSKTNNKSEEAVETSKNKKKNKKKNKSGR
TEQEEEDLDKILAELGEGPAVTKPTTAAPPQEEKAQVQPEPEPVIAADATGEKEGEDEPA
ESAAAKKKKKKKEKEKEKKAAAAAAAAEVKEEETKIETSDTKKKDAKSKAADKKLPKHVR
EMQEALARRKEAEERKKKEEEERLRKEEEERRRQEELERQAEEAKRRKKEREKEKLLKKK
QEGKLLTGKQKEEARRREAMRNQILANAGGFSLPTADKEGAPTKRPIYQTKKSKPAHHAN
GAASSKPEENIQSKAKEQEESETKVELESVDDEKVDEVESNNTEDNSVVADAAEGNGMEE
EDDDDDGEWDEKSWDDVNLNIKGAFDDEEADSVPKPAVQKDIKSAPLASRNAASPAVAKP
MVEAKKPVTSQPNTSQPEVKSTDKNLKKNTAVQNKVPKSDASPKQSEDLRSPICCIMGHV
DTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAANIRERTKELKADATLKVPGLLVID
TPGHESFTNLRSRGSGLCDIAILVVDIMHGLEPQTIESLNLLKMRKTEFIIALNKVDRLY
DWKARRNSPIGMTLKKQTKDVLSEFNRRVTHVITQFKEQGLNTELYYKNKEMGETFSIVP
TSAVTGEGIPDLLLLLVQWTQKTMVEKLTFSDEVQCTVLEVKVIEGLGTTIDVVLVNGVL
HEGDQIVVCGLQGPIVTTIRALLTPHPMKEIRVKGAYLQHKEIKAAQGIKIAAQGLEHAI
AGTSIYVVGPDDDLEDIKEAAKEDMQSVMSRIDKSGEGVYVQASTLGSLEALLEFLKTPE
VNIPVSGIGLGPVHKKDVMKASVMLEKKNEYATILAFDVKVTPEARELADELGVRXFIAD
IIYHLFDQFKAYIDGLKEERKREAADEAVFPCVLKILPNCIFNKKDPIVLGVDILEGILR
VGTPICIPQREFIDIGRIASIENNHRPVDSAKKGQKVAIKIVGSNTEEQQKMYGRHFELE
DELVSHISRRSIDILKANYRDDLTLDEWRLVQRLKILFKIP
NT seq
4086 nt
NT seq
+upstream
nt +downstream
nt
atggctggagggtcggcttttgatgctcttgctgatgatgatgatcggatggaagtgaat
gatgaggatgtggtcgctaaagctttgaaaggcaaaaagaagaagtctaaagggggaaag
aagggtggaaataggtttgcagcggctgcacttgatgaatttgatgaggatttcagtgag
aaagtcgatgagatgaaagccaaggaagaagatgttccttcaatttctttctcggataag
aaaaagaaatccaaatcgacaaagaagagtgggaaagctattggagggtcagcttttgat
gcaattgctgctgaagatgatgatggggaggttgttgatgatggtggtgatgtttcaaag
gaagagagcaaggttgaggttgatgatgatgatggtgatgatttgattgctaaggctttc
gcgggaaaaaagaagtccaagggtggaaaaaagggcggtggaagtaggttcactgccacg
gtacttgatgagcttggtgatgaaggcggcctcaaagaggatgtggaagatgatgttcct
gtgtttccttcatcagataagaaaaagaagtcgaagtctgctaggaaggttggtaatcca
ttcagtgccgccgcacttgatgaagttgaaagcgattcggagttgaaagaggatgaggaa
gatgatgttgcttctttttctttctcagataagaaaaagaagtcgaaatcaaagtcttct
aagaagagtggtaattctttcagtgcagcattgcttgatgacgaagatgaaggagatgct
tcggtatctgaatccactggtgctgctgctattgatgattatgatgacgatacttccatg
gttgcattttcaggtaagaaaaagaagtcatccaagaagaaaagtagtgccgcatttgca
gccttcggtgatgaggcagggcagcaaagtgaagtttcagacatggttgaaaccgaacta
tcaagtttaggaactagtaatgttgaagctgttgattctaaaaccaacaacaagagtgaa
gaggctgtggaaacctcgaagaacaagaagaagaataagaagaagaataagagtggaagg
actgaacaagaggaggaagatttggataaaattcttgctgaacttggtgaggggcctgcc
gtaacaaaacccacaacagcagcccctccccaggaggagaaagcccaggttcagccagag
ccagagccagttatagctgctgatgccacaggtgagaaagaaggtgaggatgaacctgca
gagtctgctgcagcaaagaagaagaaaaaaaagaaggaaaaggaaaaggagaagaaggca
gctgcagcagctgctgcagctgaggttaaggaagaggaaacgaaaatagagacctctgat
accaaaaagaaagatgctaagagtaaagctgctgacaagaaactaccaaagcatgttagg
gagatgcaggaggcacttgctaggagaaaagaagcggaagagaggaagaaaaaggaagaa
gaggagaggttgaggaaggaagaagaagagcgacgtcgacaagaagagctcgagcgacaa
gcagaggaggctaagcgtaggaagaaggaaagggaaaaggagaagctcttaaagaagaag
caggaagggaagttgttgactgggaagcaaaaggaagaagctcgccgccgggaggcaatg
aggaaccagatattggccaatgcaggaggcttttctttgcctactgcagacaaagaaggt
gcacctacaaaacgacctatatatcagacaaagaagtctaaaccagctcatcatgctaat
ggtgctgcttcttctaagccggaggaaaatattcaatcaaaggcaaaagagcaagaagag
tcggaaaccaaggtcgagttggagtcagtggatgatgagaaggttgatgaagtagaatca
aataacacagaagataattctgtagttgcagatgctgctgaagggaatggaatggaagaa
gaagatgatgatgatgatggtgaatgggatgaaaagagttgggatgatgttaatcttaat
atcaagggtgcctttgatgatgaagaagctgattctgtgcccaagcctgcagtgcagaaa
gatataaagagcgctccactggcttcacggaatgcagcctctcctgcagttgccaagcca
atggttgaggccaagaaaccggtgacttcccaaccaaatacatctcagcctgaagttaaa
tctacagacaagaacttgaagaaaaatactgctgtgcaaaataaggtaccaaaatcagat
gcttctcctaagcagagtgaagaccttcggtccccaatttgctgcattatggggcatgtt
gatactggtaaaacaaagctgctggattgcatccgaggcactaatgttcaggaaggtgag
gctggtggtattacacaacagattggtgcaacatattttcctgctgctaacatacgggag
agaacaaaggaattgaaggctgatgccacattgaaggttccgggcttattagttattgat
acccctggtcacgaatcctttacaaatcttcggtcaaggggatcagggttatgtgatatt
gccattttggttgtcgacattatgcatggtttagagccacagacaatagagtccctcaat
cttctgaaaatgaggaaaactgagtttattattgcattgaataaggtagacaggctttat
gactggaaagctcgccgcaattcaccaattgggatgacacttaagaaacaaactaaagat
gttctatccgaattcaataggagagttacacatgttataactcagttcaaggagcaaggg
ttgaatactgaattgtattacaaaaataaggagatgggtgaaactttcagcattgtgcct
acaagtgcagtcactggagaaggcatcccagatttgttattattactggtccagtggacc
cagaaaacaatggttgaaaaacttacattcagtgatgaagtgcagtgtacggtcttggaa
gtgaaggtcattgaagggcttgggacaactattgatgttgtgttggttaatggtgttctt
catgaaggagatcaaattgtggtttgtggcttgcagggccctatcgtcaccactatcaga
gcattgttgacaccccaccctatgaaggaaatccgagtgaagggagcgtatttgcagcac
aaggagatcaaagcagcacagggtatcaagattgctgcacagggccttgagcatgctatt
gctggcactagcatctatgttgtaggtcctgatgatgatttggaagatatcaaagaggca
gcaaaggaagatatgcagtcagtcatgagtaggattgacaaaagcggggaaggggtttac
gtacaagcttctacccttggctctttggaagcgctgctggaatttctgaaaactccggaa
gtaaatattcctgttagtggtataggcttaggccctgtgcacaaaaaagatgtaatgaaa
gccagtgtcatgcttgaaaagaaaaatgagtatgctactattttggcttttgacgtcaag
gtgaccccggaggcacgagaactagcagatgaattgggtgtgaggnattttattgctgat
atcatttatcacttattcgaccaattcaaagcatatattgatggtcttaaagaggagaga
aagagggaagcagcggatgaagcagtcttcccttgtgttttgaagattttacctaactgc
attttcaacaagaaggatccaattgtcttgggggtggatatccttgaaggcattttaagg
gttgggacgccaatttgtattcctcaaagagaattcattgatattggtcgaatagcttcg
attgagaataaccatagaccagttgattctgccaagaaaggccagaaggtagccatcaag
atagttggatccaataccgaggaacaacagaaaatgtatggaaggcattttgagcttgaa
gatgagcttgttagtcatatttctagaagatcgatcgatattctcaaagctaattatagg
gatgatctgacccttgatgaatggaggttggttcaaaggctgaagatcctcttcaaaatt
ccttga
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